-users-
[EMAIL PROTECTED] On Behalf Of Nicklas Nordborg
Sent: Thursday, November 01, 2007 6:22 PM
To: BASE ML
Subject: Re: [base] regular expression and wildcards
vegard nygaard wrote:
I also have similar problems.
Some of my gpr files have different numbers than 635 and 532 as supplied
I also have similar problems.
Some of my gpr files have different numbers than 635 and 532 as supplied in
the GenePix raw data import (cy5/cy3) config shipped with base2.
So in the base2 config the column mapping is
\F635 Median\
But my column is named F633 Median how will that be using
and delete
never finishing jobs. I looked at curStatus and queuePosition. But be
careful if you start changing the database yourself like this. Back up the
relevant tables first.
Vegard Nygaard
Software Engineer
Department of Tumor Biology (Montebello)
Rikshospitalet-Radiumhospitalet Medical Center
Dominic wrote:
Quick question, are using the AnnotationTypeCvImporter plugin contained
in the Tab2MageImporter.jar file?
No. I installed and tested the AnnotationTypeCvImporter with its own jar
file and assumed it was the same.
I now changed to use the Tab2MageImporter.jar and the plug-in
You can select which scan a raw bioassay belongs to from the Edit
rawbioassay page.
Thanks Nicklas, this was what I was looking for (but at the wrong place).
In order for the importer to be really
useful I need to connect the raw data to samples in some way. From
reading
earlier
to samples I wonder if
I can use the Tab2Mage Importer or BatchDataImporter with Illumina data?
Best regards.
Vegard Nygaard
Software Engineer
Department of Tumor Biology (Montebello)
Rikshospitalet-Radiumhospitalet Medical Center 0310 Oslo
Bioinformatics user support (NMC)
Phone 0047 22935590
