something is going wrong with the java
mysql drivers as you suggest.
thanks,
Sam
On Fri, 2006-04-07 at 07:57 +0200, Nicklas Nordborg wrote:
Sam Hunter wrote:
Hi, I'm new to Base, and am trying to set it up for testing. I am
install on Ubuntu with base-2.0RC1. I downloaded and install
Petr Divina wrote:
Hello,
how can I link (= associate) a particular labeled extract that was
used in a multi-color hybridization to a particular intensity column
in the raw bioassays (or particular channel in the experiment) ?
It is not possible.
/Nicklas
I have an 8-channel raw data
Chris Wiita wrote:
Alright, that makes sense. The first time I ran the script the error
was different, and in repeating the script, I never noticed it was way
off in the first place! I turned logging, dropped both BASE2 DBs and
recreated them, and ran initdb.sh. It was successful.
Keith Ching wrote:
Hi,
I am looking into using BASE2 to store ChIP-chip data from the NimbleGen
platform.
Each whole genome scan has 14 million probes, divided up into 38 arrays
of 370k probes each.
What is the feasibility of storing this information in BASE2? Say we
had 100+ whole
Hello all,
I am happy to announce that BASE 2.0 is now available for download:
http://base.thep.lu.se/wiki/DownloadPage
Installation instructions and other documentation are available at the
BASE 2 home page: http://base.thep.lu.se/
/Nicklas
? Send a reply to me off the list.
Thank you very much.
/Nicklas
--Chris W
Nicklas Nordborg wrote:
Chris Wiita wrote:
Alright, that makes sense. The first time I ran the script the error
was different, and in repeating the script, I never noticed it was way
off in the first place
Emil Lundberg wrote:
Hi all,
We are trying to go from BASE 2 RC1 to 2.0, and neither updating nor
initializing a new database seems to be working properly. Question is;
is it just us, or a BASE/Java/MySQL versions mismatch? If the latter,
are there any officially recommended/supported
I am not able to reproduce the error. Unfortunately there is a glitch in
the error handling which causes a second error to hide the original one.
If you turn on debugging there might be some more information
displayed. You turn on debugging by editing the
Hello all,
BASE 2.0.1 is now available for download at:
http://base.thep.lu.se/wiki/DownloadPage
Most fixes are related to the migration program and the Base 1 plugin
executor.
/Nicklas
-
Take Surveys. Earn Cash.
Micha Bayer wrote:
Hi,
I am working on a web service that talks to a BASE2 install to get data
out (for an analysis pipeline) and then store data back into it.
We are supporting three separate institutions which eventually will all
have separate BASE2 installs, but I would like there to
Robin LIECHTI wrote:
Dear Base2 Users,
I am a curator (and administrator) of a Base2 installation and I have to
load experiment data from several users. So I log in as the
administrator, I create the samples, extracts... and load the data. Is
there a way of changing the owner of the
Hello all,
I am just wondering if anybody is interested in running BASE 2 on an
Oracle database?
The reason that I ask is that I think it is possible to fix the things
that is causing the current implementation not to work on Oracle. But we
are not spending time on this if there is no
Lepp, Dion wrote:
Hi all,
I was wondering how often the base2 demo server is updated ie. are the
changes shown in the Trac timeline reflected in the server immediately?
No, the server has the latest released version. The reason is that there
is a risk that updates won't work between
Emmanuel Courcelle wrote:
Hello
I have setup for a few days a new Base2 installation, running with
postgresQL.
I know that the update process wan not safe with psql, due a bug in
hibernate. However, the updating process ran without problem from 2.0.2
to 2.0.3
This updgrade didn't
Emmanuel Courcelle wrote:
Nicklas Nordborg a écrit :
Hello Postgres users,
We have now published some information about a workaround to make it
possible to upgrade a BASE installation running on a Postgres database.
Hi Nicklas
Thanks for the workaround.
I did the updatedb.sh as you
Emmanuel Courcelle wrote:
Hi Nicklas
Here are the first 44 lines of the file
I tried to dos2unix-ify, it did not change anything for Base.
Thanks for your help !
I have now tested with your file and it works perfectly. Perhaps it is a
browser-related problem. I have tested with Internet
Micha Bayer wrote:
Hi,
I am running BASE2.1 under Tomcat 5.5 and I am getting my catalina.out
log swamped by BASE log statements. Is there any way I can turn this
off?
It doesn't sound normal. What kind of log messages do you get?
I have tried to change the log levels in the
Under Array Slides / Create multiple
the Start at field is limited to 3 digits.
is it possible to increase this to 4 digits as we continuously number
our slides
and it's in the thousands already. ( ie. i'd like to make slides
1100-1150 )
Oops, it shouldn't be. Only the number of
Emmanuel Courcelle wrote:
The only significant change you have made is Rgn R? to Rgn R. Does it
still work if you change this to Rgn R\E.\Q?
Great: I took the autogenerated regex, replaced Rgn ? by Rgn R\E.\Q
without changing anything else and it worked.
However, I changed also the
Emmanuel Courcelle wrote:
file we have been testing on the Rgn R² column should be column number
32 and the mapping to use \32\.
hum... rather 33, I think (it was 33 in Base 1.2).
Does the column numbers start at 0 or at 1 ?
As I wrote in the previous mail:
The columns are
Keith Ching wrote:
it seems you can make a String annotation type and attach it to raw
bioassay and fill it with
a href=javascript:Main.downloadFile('34537569891fa9bf', 142)
img border=0 class=icon title=Download the contents of this file
src=/base2/images/download.gif/a
which will
Keith Ching wrote:
True, the session id is good only once.. but in subsequent logins, BASE2
will ask to reauthenticate and after success you can still download the
file.
still, of course.. i would rather have the download link be auto
generated upon
import of the datafile.
is it
Micha Bayer wrote:
Mystery solved. This is nothing to do with BASE -- it's Tomcat's fault.
It looks like the Tomcat people have changed tack and they are now
including a log4j.xml config file by default with Tomcat (it used to be
a log4j.properties file, which is what I was initially looking
Audrey Bihouee wrote:
Hi everybody,
I just upgrade from base1.2 to base2, and I have a few questions :
- What are exactly Biosources ? Does it match with the sample origin in
base 1 ? But, I can't see any ontology (tree structure) as in base 1.
Have anybody details on it ?
It
Reha Yildirimman wrote:
Hello,
I have a few import jobs that froze and never finished the imports.
After I started a jobs that finished the task I am left with those
unfinished jobs still listed
inside the execute section of Jobs which I can't delete after moved
to the trashcan.
The
Giovanni Coppola wrote:
Hi everybody,
I have two questions:
1) is there a way to download images or raw data files in batches?
No.
2) while I was trying that (to download more than one file at once),
in the 'Files and Directories' tree, I accidentally moved Offline
some files, and now
Anup Parikh wrote:
We have been using base 1.2 for a year now. The batch importer we had
created for base 1 is useless for base2. Therefore we are moving to
using the UI to import each chip. We are using the ImaGene quantitation
software and which seems to be supported in base2. But I
Emmanuel Courcelle wrote:
What does mean to move offline ?
Is it the same as: Delete THEN Empty trash ?
No it is not. A file exists in two places. As an entry in the database
and as a file on the disk.
The Move offline feature is used when you want to delete the file on
disk but keep the
Jari Häkkinen wrote:
Hi all,
Just a thought, I think the best choice to trigger a large import like
this is to create a plug-in instead of adding extra tabs to the file
browser. The plug-in should start by requesting the zip file/directory
to import. If the zip file is not already
Micha Bayer wrote:
I am just talking to my boss about code ownership issues but I can
probably offer up my stuff one way or another, and people can then
either cannibalise it and turn it into a plugin, or adopt it (or a
modified version) into the core etc etc -- happy with any solution
Micha Bayer wrote:
Hi Jari,
That sounds perfectly reasonable when you put it like this, but
I was put off going down that route by a post to the list from
Nicklas
http://www.mail-archive.com/basedb-users@lists.sourceforge.net/msg00228.html)
where he says that it is best to not use a
Emmanuel Courcelle wrote:
Hi all.
Sorry to bother you again with this point, but I still does not
understand everything...
I tried to define a new type, called float colored: it is a float,
colored with min value as 0, max as 0, mid as 5
I want to add 2 values to my data:
-2 * (ch(1) /
Micha Bayer wrote:
So am I right in thinking that if I change this to the following...
public class ZipFileImporter extends AbstractPlugin implements
InteractivePlugin, AutoDetectingImporter
{
private static final SetGuiContext guiContexts =
Emmanuel Courcelle wrote:
Hello
We are trying to create an experiment composed with:
-4 slides
-3 times each reporter on each slide
So, we have up to 12 replicates for each reporter (sometimes less
because some flagged spots were filtered out).
How to make a final bioassay set with
.
There is however no information that links a rawbioassay to the file
that was used for importing the data. It has nothing to do with the file
names.
/Nicklas
Am I off track?
Cheers
Charles
On Dec 8, 2006, at 9:00 AM, Nicklas Nordborg wrote:
Keith Ching wrote:
Hi,
I am trying to write
david vilanova wrote:
Thanks Nicklas for you quick answer regarding the conversion from string
to int.
I have decided to import the data using the string to int conversion.
However I'm trying to export the plate wells back again to a file using
the default exporter and get a bug. I'm
Emmanuel Courcelle wrote:
Nicklas Nordborg a écrit :
Emmanuel Courcelle wrote:
Hello
We are trying to create an experiment composed with:
-4 slides
-3 times each reporter on each slide
So, we have up to 12 replicates for each reporter (sometimes less
because some flagged spots were
Keith Ching wrote:
I have a List of File objects. what is the best way to zip them all
together and download it?
I assume that you want to this with a plugin. I think the best way is to
create a new File (net.sf.basedb.core.File) object and then use
java.util.zip.ZipOutputStream for writing
Gabe Dagani wrote:
Greetings,
Has anyone created a simple walkthru for setting up a simple experiment,
uploading GPR, GPS, TIFF files into a project and doing some analysis?
I am just a beginner and the manual is outdated for base 2.0.
The test procedure that we use before a new
david vilanova wrote:
Hello,
I'm trying to import a GPR file and had some problems. I have submitted
the bug to the base ticketing system. The problem comes from assigning
incorrect wavelengths to the dyes CY5 and CY3 (view opened ticket #467).
In the bug descriptions I also submit the
david vilanova wrote:
Hello,
Following the advise given to emanuel for the generation of the spots, I
went through the example but could'nt manage to create the spots.
Do i have to submit three time the tiff file to create the spots in the
editor (it's asking for jpeg files°. Anyway the
[EMAIL PROTECTED] wrote:
Hello,
I have use the package Easyphp1.7 (PHP4, PHPMyAdmin) on windows to developp a
database, and I would like to know if it is possible to install BASE with it
or
How to install BASE on Windows?
BASE 1 is using PHP and in some parts C/C++. It is not possible to
david vilanova wrote:
Hello,
I have tried with:
PixelSize=10
ImageOrigin=4440,1000
I have double checked the image within genepix and the coordinates
(expressed in µm) are correct (gpr file matches with the tiff file). 1µm
correspond to 10pixels in genepix.
I think it is the other way
david vilanova wrote:
Hello,
I'm having problem to setup permissions.
How can i give permissions to all users to create a new raw bioassay
from a scan. Actually I can only do it with account root. I did try to
allow the group of users to write access,use,read to raw bioassays in
the
david vilanova wrote:
Hi folks,
I finally managed to identify the problem. As i said in my previous
email i tried a tif image with only a signe channel:
[EMAIL PROTECTED] SPOTS]$ ls *
-rw-r--r-- 1 david bioinfo 9,1M Jan 23 12:19 532.tif
-rw-r--r-- 1 david bioinfo 9,3M Jan 23 12:20 635.tif
Keith Ching wrote:
Hi,
i have written a plugin that takes a spreadsheet and creates samples -
rawbioassay
and links the data file to the rawbioassay.
is there a way i can also run the plugin without going through the web
interface.. ie.
initiate running it from another program?
No,
Marie Mooney wrote:
Hi.
I don't know much about BASE 1.2 but I think that you must have the
MySQL running for stopBase.php to work. And you must also have MySQL
running to be able to upgrade from 1.2.14 to 1.2.17. So you have to find
a way to start the MySQL server again.
/Nicklas
I am
Reha Yildirimman wrote:
Hello,
I am trying to import Reporter into a new reporter list inside a
fresh,new base2 installation, getting the following error:
Caused by: java.sql.SQLException: Unknown column 'reporterda0_.' in
'field list'
Can you please submit the entire stacktrace
Emmanuel Courcelle wrote:
Nicklas Nordborg a écrit :
Emmanuel Courcelle wrote:
Hello
I am trying to configuration the Raw data importer plugin for use with
Imagene files.
I do not know how to map theproperties Block, MetaGridX, MetaGridY
1/ There is no Block column in the file, but I
Keith Ching wrote:
hmm.. i had restored back to 2.1.2, then upgraded to 2.2.1 and it
was working ok until i took ownership of some jobs as root.. then went
to the trash can. it gave me this error:
Object with id: 2 was not of the specified subclass:
net.sf.basedb.core.data.BioMaterialData
Micha Bayer wrote:
Hi,
I am trying to add Affymetrix support for the batch import plugin I have
been working on, and I am having trouble getting things to work with the
Affymetrix class. Is there a unit test for this class that I could look
at for finding out about proper use of this class?
Micha Bayer wrote:
Hi Dominic,
Thanks for trying this out.
I tested the batch import today, on an affy experiment and I got the
ff
exception:
=
===NEW BATCH IMPORT =
=
zn
Jeremy Davis-Turak wrote:
On 3/14/07, Nicklas Nordborg [EMAIL PROTECTED] wrote:
Can someone please give us a hint about how to reproduce this behavior?
When I add a new plugin, BASE will complain if I enter an incorrect path.
Nicklas,
To reproduce this error, I would try creating
Reha Yildirimman wrote:
Hello,
everytime I try to export a tab-delimited file or xml file (from e.g.
extracts, biosources or any other place) I get the following error:
***
# Permission denied: Immediate execution is not allowed for this plugin.
***
I gave the user I use read,write
Ana Conesa wrote:
At 19:17 22/03/2007, you wrote:
Reha Yildirimman wrote:
Hello,
everytime I try to export a tab-delimited file or xml file (from e.g.
extracts, biosources or any other place) I get the following error:
***
# Permission denied: Immediate execution is not allowed for this
Bob MacCallum wrote:
Developers: are there any plans for BASE2 web gui plugins?
Well, yes and no. It is something that we would like to have and we have
a ticket for it (http://base.thep.lu.se/ticket/436). At the moment it is
not top-priority though so it is difficult to say when (and if)
Julie Naito wrote:
Is this the case with BASE version 1.2.16?
Sorry, I assumed you were asking about BASE 2.
I guess the statement about that the same sample must end up in the same
channel is true also for BASE 1. I don't know if that requires different
file formats or not in the Imagene
Collett, James R wrote:
Dear BASErs,
I'm having problems configuring the raw data importer to import data
from a ScanArray CSV file into a new raw data table that I created by
modifying raw-data-types.xml. Every plugin configuration I try returns
a NullPointerException error. Can you
Simon McGowan wrote:
Hi,
We have run into problems after editing the raw-data-types.xml and
extended-properties.xml
files. After each edit the server was stopped, I ran updatedb.sh and
updateindexes.sh and
restarted the server. However we can now no longer see any reporters via the
Chad Matsalla wrote:
Nicklas Nordborg wrote:
Can you tell me how to create the appropriate file objects when the files
are here and not connected to the base datbaase?
This is not possible. The plugin expects net.sf.basedb.core.File objects
not java.io.File object. And you can't work
Jean-Pierre Gauthier wrote:
Hi BASErs,
I am a new Base2 user and I have a java.lang.NullPointerException
when trying to import Genepix raw data in:
View-Raw Bioassays..-Import
My raw data importer seems to work well. I have looked for extra
spaces but all looks OK..
Could somebody help
Peter Juvan wrote:
Q: How to denote unknown values in a tab-delimited result file (for example
M-values of reporters with zero intensity) so that BASE does not interpret
them as zeros? Empty places are not OK, they are interpreted as zeros (at
least in Base 1.2.17).
In BASE 2, empty string
Nice work! It seems like you have spent some time on this. Do you have
some code and/or images that can be useful for us? The image and data we
have access to are from Genepix 4.1.
I think that adding parameters for which image to use in a multi-image
TIFF should be easy to implement. This can
Jean-Pierre Gauthier wrote:
We are using BASE 2.2.1
and Mysql Ver 14.7 distrib 4.1.12
We have only tested BASE with MySQL 5.0. Can you upgrade and check if it
works? I think it may be a problem with the older MySQL version.
Unfortunately, we can't support anything before 5.0 and I don't think
Chad Matsalla wrote:
Nicklas wrote:
Nice work! It seems like you have spent some time on this.
I certainly have. JAI isn't exactly intuitive.
No, it isn't.
Do you have some code and/or images that can be useful for us?
I certainly do. I basically check to see if the user provided
Bob MacCallum wrote:
Hi,
I just spent the afternoon getting to know the array design and raw data
import into BASE2 - starting with genepix format - and have come across a few
things.
I'm using BASE 2.2.2 (build #3172; schema #30). I have looked through the
fixes for 2.2.3 and decided
In the meantime you can try using a splitter regexp that also removes
white-space. Try something like \s*\t\s* instead of just \t. I have not
tested this but it might be enough to make it work.
I guessed there would be a neat trick like this, but couldn't think of it last
night.
See my previous reply to this error.
http://sourceforge.net/mailarchive/message.php?msg_name=462CAC84.7020801%40thep.lu.se
/Nicklas
Jean-Pierre Gauthier wrote:
Hi BASEr's
I have some trouble to perform my analysis thus I send you
what I have done.
Could somebody say me what is wrong?
We
Chad Matsalla wrote:
Gretings!
I see this as well. It's because this query:
SELECT COUNT(*) AS `mapCount` FROM `base2_dynamic`.`D320RawParents` `rawmap`
WHERE `rawmap`.`cube` = 3 GROUP BY `rawmap`.`column`, `rawmap`.`position`
ORDER BY COUNT(*) DESC
should say:
SELECT COUNT(*) AS
If you are using MySQL 5.0.27 this is caused by a bug in that version.
Either use an older version of MySQL or remove 'useCursorFetch=true' the
db.url setting in your base.config file. The second option may give you
out-of-memory problems if you have a large database. In that case, you
must
Steve Taylor wrote:
Hi,
I got a confusing message when I was using the Experiments Import.
Basically, BASE was expecting a zip file and I was (perhaps stupidly)
trying to upload a single file. The BASE WWW interface returned:
'We couldn't find any file format mathing the file
Chad Matsalla wrote:
Greetings,
I think the subject is quite clear. I have a Raw Bioassay in which the user
forgot to specify the array design at creation time. The user went on to do
a bunch of analyses but the experiment validator said the Raw Bioassay had
no array design. When you edit
Bernd Schwendele wrote:
Hi,
I have a problem with the mirgrate-script. I do not have any glue
what this message means.
It seems like the migration of BASE 1 plug-in definitions is broken. If
you don't need those you can disable that part of the migration. Change
the 'includePlugins'
Serge Eifes wrote:
Dear Nicklas Nordborg,
I have a similar problem as pointed out in the mail from 2007-03-05 by = Ana
Conesa. In one of your replies from 2007-03-06 you give a link to a mail on
how to solve this problem but this link only points to some kind of spam
mail not related
Micha Bayer wrote:
Hi,
Is there a way of programmatically storing externally normalized
microarray data in BASE? I have been looking through the API but can't
seem to find an obvious way of doing this.
We run a workflow outside BASE (currently in GenePattern) which pulls
data out of BASE
Bob MacCallum wrote:
Emmanuel Courcelle wrote:
Hello
Trying to use BASE with affymetrix data.
me too!
2/ I can't see any new Reporter in the View/Reporters
You need to import the reporter from a reporter annotation file (.csv).
See
Bob MacCallum wrote:
A useful GUI addition would be another column on the Raw bioassays
list view called 'Has inherited annotations'. The content of that column
would be a simple yes/no. Alternatively, it could be called 'Inherited
annotations' and could provide more information.
Without
Bob MacCallum wrote:
I don't know if this would be dangerous, but how about:
shift-click on the (+) symbol (new sample, new extract, new scan etc)
will create the new object with the default settings
in other words it would be equivalent to clicking on the (+)
and then immediately
Bob MacCallum wrote:
Thanks for that Nicklas, I had only checked out the overview feature briefly
once before. It's very powerful (being able to disable certain warnings is
nice). And the Properties tab of the experiment page does indeed list the
inherited annotations for each experimental
Bob MacCallum wrote:
I just found that my guest user account was unable to get details
of bioassayset transformations - for example it would say
Plugin - denied -
Plugin configuration - denied -
and the same under transformation and job. This isn't ideal - a guest
user
Nicklas Nordborg wrote:
Jeremy Davis-Turak wrote:
I have implemented the incorporation of Illumina data into our BASE
system, along with a raw data importer. Our version requires that the
gene_profile.csv be split up into separate files, which we have done
with an R script. This can also
Virginie Garcia wrote:
Hi all,
I try to download to webservices enabled version of BASE with svn as
mentioned on the plugins page
(http://baseplugins.thep.lu.se/wiki/se.lu.thep.webservices_clients).
When I check out the web services branch (svn co
Jeremy Davis-Turak wrote:
Hi Nicklas,
I uploaded some data files to the Ticket.
Thanks a lot! That was exactly what we needed.
Here is a brief summary of what the data looks like:
1) Annotation data: CSV file. It's too bad that it's a CSV, because
some of the fields contain commas!
Sergio Contrino wrote:
dear base,
i was attempting to 'create a new bioassay root' for an experiment with
the array affymetrix 250sty, using Plier.
i get the error
Error: Table 'base2dynamic.D2Spot' doesn't exist
This error is a bit strange since the table should automatically be
Reha Yildirimman wrote:
I have another approach and if that seems ineffective to you please
drop me a line!
We also had that approach to begin with. However we were a bit worried
about database performance since the Affymtrix chips contains a lot
probes. Since most tools needed the CEL
Reha Yildirimman wrote:
Hello,
when configuring a raw-data-importer plug-in one has to state the
column where the reportet ID is given. Is it possible to instead
state 2 columns which when merged give the reporter ID ? And if yes
how can I add another character like - in between those 2
jesse paquette wrote:
Hi,
I'm trying to get BASE up and running, and I've hit a snag attempting to
load a CDF file. The HTTP Status 500 page popped up with the following
information:
org.apache.jasper.JasperException: Unable to compile class for JSP:
We know about this problem
jesse paquette wrote:
Thanks Jari,
Was the above the only things you needed to do to get BASE to run on MS
Windows?
Not completely. I submitted a bug ticket via user base. On the Create
plugin page, I get a java.lang.ClassFormatError (page
admin/plugindefinitions/index.jsp) with
jesse paquette wrote:
Ok, I deleted the extra line at the end of the show_exception file. The new
error message is:
File creation in base.config[userfiles] failed
There can be two reasons:
1) The path specified in base.config for the userfiles property doesn't
exists
2) The user that
jesse paquette wrote:
Ok, I deleted the extra line at the end of the show_exception file. The
new
error message is:
File creation in base.config[userfiles] failed
There can be two reasons:
1) The path specified in base.config for the userfiles property doesn't
exists
2) The user that
Dominic Oyeniran wrote:
The workaround works.
But thats after I removed each raw bioassay and its associated
experiment first and thereafter remove all the other items by emptying
the trash.
Note I have multiple experiments loaded :affy, genepix and agilent from
Biosource to
Dave Hau wrote:
2.4.3 release followed closely after 2.4.2 release. I would like to
upgrade from 2.4.2 to 2.4.3, but was just wondering if I could keep my
database and just copy the entire 2.4.3 www directory to my tomcat
server. Preferably I would like to not have to nuke the entire
[EMAIL PROTECTED] wrote:
:
Hi!
I'm Pietro, a young bioinformatic from Italy who is trying to make Base2
usable
for the researchers here where I work.
The problem cames out when I try to make fold change filter on Base2-MeV.
As you know MeV allow fold change filter only if you
vegard nygaard wrote:
I am trying to make a sub selection of my data filtering for spots with id
starting with SP. I used the Expression builder and tried:
rep('externalId') == SP*
and
rep('externalId') == SP%
Does the Expression builder support wildcards?
No it doesn't.
In the ticket
Micha Bayer wrote:
Hi,
I am trying to import some raw data with flags such as NORMAL and
ABNORMAL into raw bioassays. I have mapped this column to the 'Flags'
field in the raw data importer config for Genepix format (this is on
BASE 2.3.0). For some reason the importer chokes on the values
Chad Matsalla wrote:
Nicklas wrote:
Are you logged in as the user that is the owner of the experiment?
I am logged in as root. Shouldn't root be able to delete anything?
Yes, the root user can delete anything, but this is not a permission
issue. It's just that the Trashcan can only list
Chad Matsalla wrote:
Greetings All!
Is there anything that I can so about this error? I'm completely stuck.
I don't really know what a data cube is or how it could have already
been committed.
A datacube is a representation of the data in the dynamic database that
is used to store analysed
Reha Yildirimman wrote:
Hello,
I have the following setup:
BASE2.4.0
tomcat 5.5.17
mysql 5.0.45
64bit linux system
The error seems to be related to the Recently view items menu. For
some reason the string that holds the information has become corrupt and
the code is unfortunately not
vegard nygaard wrote:
Hi I am testing out the Illumina importer and have some questions.
Can I connect the created raw bioassays to hybridizations (and indirectly to
samples)?
Yes. When you run the importer you have the option to select a scan that
will be associated with the raw
Nicklas Nordborg wrote:
The error seems to be related to the Recently view items menu. For
some reason the string that holds the information has become corrupt and
the code is unfortunately not able to handle this. The best advice I can
give right now is to edit the basedir/www/include
1 - 100 of 372 matches
Mail list logo