On Thu, 25 Feb 2010 17:27:25 +1000, Shlomi Fish shlo...@iglu.org.il
wrote:
Hi Dave!
Hi Shlomi!
Thank you for your reply.
[snip]
I'm trying to use Net::SSH::Perl, but it requires the Math::GMP module.
I
have installed a GMP library (required for Math::GMP) but when I try to
install
On Thu, 25 Feb 2010 18:30:33 +1000, Octavian Rasnita orasn...@gmail.com
wrote:
From: Dave Tang d.t...@imb.uq.edu.au
Dear list,
I'm trying to use Net::SSH::Perl, but it requires the Math::GMP module.
I have installed a GMP library (required for Math::GMP) but when I try
to install Math
On Thu, 25 Feb 2010 19:54:13 +1000, Salvador Fandino sfand...@yahoo.com
wrote:
On 02/25/2010 07:14 AM, Dave Tang wrote:
Dear list,
I'm trying to use Net::SSH::Perl, but it requires the Math::GMP module.
I have installed a GMP library (required for Math::GMP) but when I try
to install Math
,
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+ 0.09 cusr
0.03 csys = 0.18 CPU)
Result: FAIL
Failed 1/6 test programs. 0/0 subtests failed.
make: *** [test_dynamic] Error 255
Many thanks,
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On Tue, 23 Feb 2010 11:23:23 +1000, Steve Bertrand st...@ibctech.ca
wrote:
I belong to several
technical lists, and the de-facto standard is to Reply-All.
Understood and thank you for your answer.
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with my thank you
note.
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Hi everybody,
I want to write a script that checks memory usage of my RHEL box, and ran
as a cron job say every 10 minutes.
I could write the Perl script to run a system command like ps aux, parse
that information and kill a job if 90% of the total system memory (and I
realise most of
On Mon, 08 Feb 2010 22:52:37 +1000, Shawn H Corey shawnhco...@gmail.com
wrote:
Dave Tang wrote:
Hi everybody,
I want to write a script that checks memory usage of my RHEL box, and
ran as a cron job say every 10 minutes.
I could write the Perl script to run a system command like ps aux
On Sat, 05 Dec 2009 10:07:34 +1000, Jenda Krynicky je...@krynicky.cz
wrote:
what was the name of that law? Something that said that the speed of
computers doubles every ??? years.
Were you referring to this?
http://en.wikipedia.org/wiki/Moore's_law
Dave
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Using Opera's revolutionary
On Sun, 29 Nov 2009 16:30:56 +1000, Huub van Niekerk
huubvanniek...@gmail.com wrote:
Hi,
Hello,
I started getting this error after upgrading from Fedora 11 to 12. The
line of code hasn't been changed:
open my $LPR, '|-', qw/lpr -PDeskJet940C/ or die can't fork lpr: $!;
The error is:
On Sun, 29 Nov 2009 23:39:58 +1000, Huub van Niekerk
huubvanniek...@gmail.com wrote:
open my $LPR, '|-', qw/lpr -PDeskJet940C/ or die can't fork lpr: $!;
$ENV{PATH} = ;
at the start of the script, it doesn't seem to complain any more.
Hope that helps,
Thank you, though I'm not out of
On Tue, 24 Nov 2009 18:33:30 +1000, Dermot paik...@googlemail.com wrote:
2009/11/23 Dave Tang d.t...@imb.uq.edu.au:
On Tue, 24 Nov 2009 09:39:09 +1000, Dermot paik...@googlemail.com
wrote:
2009/11/23 Dave Tang d.t...@imb.uq.edu.au:
On Mon, 23 Nov 2009 23:14:51 +1000, Shawn H Corey
On Mon, 23 Nov 2009 23:14:51 +1000, Shawn H Corey shawnhco...@gmail.com
wrote:
shadow52 wrote:
[snip]
The number is 0111
I was just wanting to get the last 3 digits from this number to be
able to get an exact word phrase from my already loaded Hash table
that I have created
On Tue, 17 Nov 2009 19:20:42 +1000, Thomas Bätzler t.baetz...@bringe.com
wrote:
Hi,
Jeff Pang pa...@uk2.net wrote:
On Nov 17, 2009, Dave Tang d.t...@imb.uq.edu.au wrote:
Is it possible to implement an incremental find* feature on a Perl CGI
page? I'm running Apache2 with mod_perl on linux
Hi everybody,
Is it possible to implement an incremental find* feature on a Perl CGI
page? I'm running Apache2 with mod_perl on linux.
For example, if I have a list of stuff (A, Aa, B, Bb, C, CA, etc. stored
in a file or database) and when a user starts typing in A into the web
form, 2
On Tue, 03 Nov 2009 17:48:55 +1000, Thomas Bätzler t.baetz...@bringe.com
wrote:
Dave Tang d.t...@imb.uq.edu.au asked:
Just a quick question, how does Perl interpret something like
$array[0.7995038473872]?
Just like $array[ int(0.7995038473872) ], i.e. the floating point number
is coerced
On Tue, 03 Nov 2009 17:23:38 +1000, Thomas Bätzler t.baetz...@bringe.com
wrote:
Majian jian...@gmail.com asked:
[...]
print Array of random: $array[rand @array]\n;
I thoght it might work but it doesnt. I hope someone could give me an
idea to work this out...
TIMTOWTDY:
a) print Array
On Sat, 10 Oct 2009 00:07:01 +1000, Jyoti jcutiep...@gmail.com wrote:
Hello All,
I am able to connect to postgreSQL database via my server. I used PHP to
connect .. now i wanna know how to create databases via php and access
queries so that i get the results on my server.
I have to make php
On Wed, 07 Oct 2009 17:38:59 +1000, Raymond Wan r@aist.go.jp wrote:
Did you consider Dave's suggestion about using netblast (which I
honestly have never used)?
Ah I shouldn't have gotten it wrong in the first place, but its wwwblast.
Basically just download the wwwblast-arch-os.tar.gz
On Tue, 06 Oct 2009 21:34:04 +1000, Jyoti jcutiep...@gmail.com wrote:
Thanks for your help Dave.
Not a problem Jyo.
Yes that was Javascript.. Just as m a beginner, I thot we can convert
javascipts to cgi scripts.!!! Am I wrong?
You can use Perl to write a cgi script that outputs
experts
you probably want to explain your problem in more general terms and
elaborate.
Thanks in Advance.
Kind Regards,
Jyo
Hope that helps,
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http://www.imb.uq.edu.au/
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On Tue, 06 Oct 2009 13:33:27 +1000, Dave Tang d.t...@imb.uq.edu.au wrote:
On Tue, 06 Oct 2009 12:11:47 +1000, Jyoti jcutiep...@gmail.com wrote:
Hello,
Hello Jyoti,
Can anyone help me to know how to make a script which can take any
sequences
by user as user input and give blast results
On Tue, 06 Oct 2009 11:57:53 +1000, Jyoti jcutiep...@gmail.com wrote:
Hello All,
Can anyone please help with one small error I am getting for line 16( The
one which is bold n italic below.)
The error is : Can't call method str on an undefined value at
firstpage.pl
line 16.
Just a warning,
###7m8E#ModuleName###7m8E#ProgramName
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Institute for Molecular Biosciences
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Hi everybody,
I constantly read about Perl's powerful regular expression matching and
string manipulation operators, and how it is superior to other programming
languages in this aspect.
Furthermore, I read this in the wikipedia entry of Perl:
The language provides powerful text
On Thu, 03 Sep 2009 13:18:44 +1000, Uri Guttman u...@stemsystems.com
wrote:
TB == Tim Bowden tim.bow...@mapforge.com.au writes:
TB On Thu, 2009-09-03 at 11:39 +1000, Dave Tang wrote:
I wanted to ask why is Perl, in comparison to other programming
languages, so powerful in text
Dear list,
I am trying to import entries in a csv file into a relational database,
however there are entries such as:
a,b,c,d,e,f1,f2,g1,g2 which spoil my split(/,/).
The quotes group f1 and f2 as a single entry. I know each each database
entry should be atomic, but I'll deal with that
On Wed, 26 Aug 2009 16:41:39 +1000, Chas. Owens chas.ow...@gmail.com
wrote:
On Wed, Aug 26, 2009 at 02:23, Dave Tangd.t...@imb.uq.edu.au wrote:
Dear list,
I am trying to import entries in a csv file into a relational database,
however there are entries such as:
a,b,c,d,e,f1,f2,g1,g2 which
Hi everybody,
I was reading perlfaq7.pod, 7.15: How can I pass/return a {Function,
FileHandle, Array, Hash, Method, Regex}?
In one of the examples it shows how regular expressions can be passed to
subroutines:
sub compare($$) {
my ($val1, $regex) = @_;
On Wed, 05 Aug 2009 12:55:22 +1000, Chas. Owens chas.ow...@gmail.com
wrote:
snip
In this case it is telling Perl that compare expects two scalars as
arguments.
snip
Now the compare($$) makes much more sense.
snip
There are many [pitfalls][2] to prototypes and they should really not be
Hi everybody,
I am having a problem with binding a variable when executing on a DBI
object. The code goes:
#!/usr/bin/perl
use warnings;
use strict;
use DBI;
#DBI variables
my $database = 'databaseName';
my $hostname = 'localhost';
my $dsn = DBI:mysql:database=$database;host=$hostname;
my
On Tue, 07 Jul 2009 08:19:50 +1000, Emanuele Osimo e.os...@gmail.com
wrote:
Hello there,
I'm a biologist and I'm trying to start using bioperl for bioinformatic
purposese but I've never programmed.
Could you suggest me something to read to start from 0 level?
Have you looked at Beginning
Hello,
I've been going through perldoc perlboot and I have a question about using
the SUPER class. Here's the code in the documentation:
#!/usr/bin/perl
use strict;
use warnings;
{
package Animal;
sub speak {
my $class = shift;
print a $class goes , $class-sound, !\n;
On Tue, 09 Jun 2009 16:16:41 +1000, Irfan Sayed
irfan_sayed2...@yahoo.com wrote:
Hi ALL,
i have written sample cgi script in perl. here it is
#!/usr/bin/perl
print Content-type: text/html\n\n;
print HI;
HTML
HEAD
TITLEWelcome to CGI scripting /TITLE
/HEAD
/HTML
HI
Try
Hello,
I have a problem, which I have put into an analogy.
Suppose a parent has 11 children. These children like chocolate. If 9 or
more of the 11 children from the same parent like a particular chocolate,
the parent will like the chocolate. I want to find out what types of
chocolate each
On Tue, 31 Mar 2009 04:49:17 +1000, John W. Krahn jwkr...@shaw.ca wrote:
Or instead of using arrays you could store the 1s and 0s in strings:
$ perl -le'
my $string = 10110111001;
print $-[0] while $string =~ /0/g;
'
1
4
8
9
Hi John,
Could you explain how the above code works please? I
Hi everybody,
I am working with a sorted array (sorted from smallest to largest),
containing coordinates as such:
13645692
13645693
13645694
13645695
13645696
13645697
13645698
13645699
13645700
13645701
13645702
13645703
13645704
13645705
13645706
13645707
13645708
13645709
13645710
On Thu, 30 Oct 2008 16:04:31 +1000, Dave Tang [EMAIL PROTECTED] wrote:
Hi everybody,
I am working with a sorted array (sorted from smallest to largest),
containing coordinates as such:
13645692
13645693
13645694
13645695
13645696
13645697
13645698
13645699
13645700
13645701
13645702
Hello,
Use bioperl (http://www.bioperl.org/wiki/Main_Page) for this task.
This should do what you want:
#!/usr/bin/perl
use strict;
use warnings;
use Bio::SeqIO;
my $fastaFile = 'myfile';
my $pattern = 'CTTGGCGAGAAGGGCCGCTACCTGCTGGCCGCCTCCTTCGGCAACGT';
my $blockThreshold = '500';
my
Try moving $utadm_1 up a few lines, before calling the subroutine.
#!/usr/bin/perl -w
$utadm_l = /opt/SUNWut/sbin/utadm -l ;
check_LANon () ;
sub check_LANon {
$LANstat = system( $utadm_l | grep On) ;
print $LANstat\n ;
}
Dave
On Tue, 21 Oct 2008 03:06:34 +1000, Ariel Casas
Try taking away the + in your filehandle line, so that it reads:
open
(WRITE,/Users/dave/Documents/Programming/Perl/081008mathables/add.txt);
Dave
On Fri, 10 Oct 2008 09:31:02 +1000, David [EMAIL PROTECTED] wrote:
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