On 08/05/2011 05:22 AM, Albert Guskov wrote:
have a look at SuperSym plugin for pymol
http://www.pymolwiki.org/index.php/SuperSym
Or the Supercell script. It has less features than SuperSym but does not
require cctbx module.
http://pymolwiki.org/index.php/Supercell
Cheers,
Thomas
--
symmetry related molecules can be generated in pymol by :
1. opening the coordinates in pymol
2. Actions, generate, symmetry mates, radius
Dear all,
I have several similar models which can be superimposed. (looks like NMR
solved structure) Then I made those superimposed models to be a single
ensemble in phaser.
My question is:
what would be the difference of running phaser with this kind of ensemble
and with an ensemble which
Hi G,
Dear all,
I have several similar models which can be superimposed. (looks like NMR
solved structure) Then I made those superimposed models to be a single
ensemble in phaser.
My question is:
what would be the difference of running phaser with this kind of ensemble
and with an ensemble
I think Garib has looked into this and introduced an option to specify residues
range for iso/aniso B refinement in one of the latest refmac versions. He'll
probably jump into the thread soon to clarify this option.
Boaz
Boaz Shaanan, Ph.D.
Dept. of Life Sciences
Ben-Gurion
Dear Catarina,
When TLS is involved in refinement using a script, the keyword tlsout
addu should be added to produce a coordinate file containing the full B
factor. The latest REFMAC interface (in CCP4i) has a button Add TLS
contribution to XYZOUT in the folder of TLS Parameters which will
Thank you for reminding me.
There is a way to define residue ranges for mixed refinement. I think I did it
by Boaz's request.
Keyword should be something like (there are ways of selecting particular atoms
of residues, but I am not sure I have tested that thoroughly):
brefine mixed anisou
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Hi all,
Sorry for a little bit out of topic question. Morph Serve is the only online
server I know to make movie for protein motion. But what I want to do is to
make a movie to show one single side chain flip. It seems Morph could not do
this. Does anyone know a way to do that? Thank you.
King
On Fri, 2011-08-05 at 15:48 +0100, WENHE ZHONG wrote:
Hi all,
Sorry for a little bit out of topic question. Morph Serve is the only
online server I know to make movie for protein motion. But what I want
to do is to make a movie to show one single side chain flip. It seems
Morph could not do
Hi,
On Fri, Aug 5, 2011 at 5:27 AM, Rachel Kramer Green kra...@rcsb.rutgers.edu
wrote:
**
(...)
There are three ways to convert file so it contains full B factors:
(...)
in fact, more:
4. The command
phenix.tls model.pdb combine_tls=true
will combine TLS from PDB file header with
Thank you all,
Best
On Fri, 05 Aug 2011 09:19:55 +0200, Thomas Holder wrote:
On 08/05/2011 05:22 AM, Albert Guskov wrote:
have a look at SuperSym plugin for pymol
http://www.pymolwiki.org/index.php/SuperSym
Or the Supercell script. It has less features than SuperSym but does
not require
Hi All,
Recently I did some soaking experiments for crystals. Most of them did not
change their space group (I222). But one of them seems to be a little bit
different (I222 --- I121).
The following is the pointless data: (the data was processed by Mosflm under
space group I222)
Laue Group
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