Re: [ccp4bb] AW: [ccp4bb] Composit omit map vs. ligand

2017-02-08 Thread Nicholas Larsen
I agree with Herman about shorter soak. In addition, if your crystals can tolerate any change in pH, you can slow your reaction down by tweaking this parameter. Another thing you should think about is the kinetics of the reaction, especially the rate limiting step. If the rate limiting step is

[ccp4bb] AW: [ccp4bb] Composit omit map vs. ligand

2017-02-08 Thread Herman . Schreuder
Dear Petr, Another possibility is that your very good substrate got turned over by the enzyme and that the 5 atoms with good electron density you see is all that is left. When you know the enzymatic reaction, this is easy to check. If this is the case, you should try a short soak (5-30