Re: [ccp4bb] PERL system call to CCP4

2008-01-24 Thread Lionel Mourey
For those who might want to use his package, Emmanuel Courcelle told me that the new URL is : ftp://ftp.toulouse.inra.fr/pub/LIPM/manu/occp4/occp4-pm-1.0.tar.gz It is there since 2002 and will not be moved. Best regards, Lionel On Mon, 14 Jan 2008 16:41:35 -0500, Ezra Peisach [EMAIL

Re: [ccp4bb] PERL system call to CCP4

2008-01-15 Thread Jawahar Swaminathan
Hi, Here is a copy of the occp4.pm file which we use at the PDB Depositions and Processing Site at the EBI. This perl module works and can be called as following: #/bin/perl require '/ebi/msd/work2/msdsd/production/x86_64/lib/site_perl/occp4.pm'; my $sfcheck = new

[ccp4bb] PERL system call to CCP4

2008-01-14 Thread szilvia
Dear CCP4 users, I am writing a PERL script to execute a number of CCP4 commands (ncsmask, pdbset, and dm) in succession. I have tried using system call or PIPE command, neither of which work. The ccp4 scripts generated work independently on the command line. Any suggestions? Thank you

Re: [ccp4bb] PERL system call to CCP4

2008-01-14 Thread William Scott
This looks promising: http://www.ccp4.ac.uk/newsletters/newsletter36/13_perl.html Ezra Peisach wrote: You may wish to look at the occp4-pm perl package by E. Courcelle and J.P. Samama (formerly available from ftp://ftp.ipbs.fr/pub/occp4 - but this no longer works...) I no longer have a copy

Re: [ccp4bb] PERL system call to CCP4

2008-01-14 Thread Gerard DVD Kleywegt
hi, I am writing a PERL script to execute a number of CCP4 commands (ncsmask, pdbset, and dm) in succession. I have tried using system call or PIPE command, neither of which work. The ccp4 scripts generated work independently on the command line. we do this in the eds map generation

Re: [ccp4bb] PERL system call to CCP4

2008-01-14 Thread Artem Evdokimov
Or use print ` xxx ` Artem -Original Message- From: CCP4 bulletin board [mailto:[EMAIL PROTECTED] On Behalf Of Gerard DVD Kleywegt Sent: Monday, January 14, 2008 5:24 PM To: CCP4BB@JISCMAIL.AC.UK Subject: Re: [ccp4bb] PERL system call to CCP4 hi, I am writing a PERL script to execute

Re: [ccp4bb] PERL system call to CCP4

2008-01-14 Thread James Irving
You can check whether something strange is happening to your environment variables within the PERL process by typing:perl -e 'print join(\n,%ENV).\n' | more hth