Dear Bob,
I am quite puzzled by the results you describe. Here are some of my
questions/comments:
- You could index in P2 and in P222. I assume you have in both cases the same
cell dimensions and for P2 beta very close to 90°?
- How do the diffraction images look like? I would check every
Hi all,
I got the same errors as Rafael.
Please help.
Thanks
Peter
Date: Tue, 16 Mar 2010 14:39:10 +1300
From: rafael.coun...@otago.ac.nz
Subject: [ccp4bb] arp/warp
To: CCP4BB@JISCMAIL.AC.UK
Dear all,
I am getting an error message when I run arp/warp using CCP4i.
Dear Paul,
I, and probably many coot users, would appreciate it very much if you
could add a create covalent link option in coot instead of having us
wade through 8 pages of instructions and hoping that we put exactly the
right number of space characters in the link record.
Best regards,
Herman
Dear Rafael, dear Li Chan,
is this the first time you run arp/warp on that particular computer? Maybe the
architecture of the binaries are not the correct ones.
You might search for the 'snow' binary (which leaves the empty log file) with
the command 'find ./ -name snow' issued from the arp/warp
-BEGIN PGP SIGNED MESSAGE-
Hash: SHA1
The other possibility you might need to consider is wether or not you have java
running on your machine.
restraints is in java, and it seems that ARP/wARP stops just when starting
restraints.
As for the error message you're seeing, it is well
Dear Raphael and others who experienced this,
in some rare cases we have seen that the 'restraints' module of ARP/wARP
can have a malfunction. If this is the case for your data, then the best
you can do at the moment - while the fix is not there - is to deactivate
the use of this module in
Dear Rafael,
We have seen this already twice, it is a bug, sorry. The fix is being
made and, when ready within a day or two, we will announce it.
With best regards,
Victor
Rafael Counago wrote:
Dear all,
I am getting an error message when I run arp/warp using CCP4i.
*/QUITTING ...
Please find enclosed the ad for a postdoctoral research position in
the NMR lab
headed by Giovanna Musco at the San Raffaele Scientific Institute,
Milano (Italy).
Note that enquiries should be sent to directly to Giovanna Musco (musco.giova...@hsr.it
).
Best,
Marina
I am going to try to guess in this one.
As you say, the positions of the iodines cannot be challenged. But maybe
their occupancies can. Is there anomalous signal from iodine at your
wavelenght? Are you expecting radiation damage? In any case:
I see a spherical shell of low density around each one
Dear all,
Please see the attachment for a new job advertisement for Research
Associate/Senior Research Associate - Biophysics/Biochemical
Pharmacology in Genentech. Applicants should apply directly on Genentech
website. In case a submission email address is necessary, please respond
to:
Hello,
the guess about ripples is most likely correct. Just do this simple
experiment: place one iodine in a middle of a cubic box and compute
F-calc map. You will see mazing picture! At least I enjoyed. You
will see a number of concentric shells of density around iodine,
positive and
Dear fellow cristallographers,
It has come to my attention that there is a petition at the moment,
directed at the *European Council of Ministers and the Parliament,
asking for less red tape and cumbersome financial regulations from the
EU concerning European research funding.*
Dear All,
Following very useful feedback, we have made a patch #1 to ARP/wARP
version 7.1, which addresses the following issues:
CCP4i GUI and command line module 'ARP/wARP solvent':
1. Assignment of Rfree
2. Reference to the log file containing the error message
CCP4i GUI and command line
Only projects near the top of the projects list
(first dozen or so?) can be deleted from the project directory task
window using the mouse right-click. This only happens when there is a
large number of projects stored in CCP4i. Also, the project directory
window cannot be resized in 6.1.3.
On Mar 16, 2010, at 9:32 AM, Paul Emsley wrote:
Coot needs to be told about the geometry of the link so that it can
refine it.
Why wouldn't it be sufficient for Coot to approximate/guess these
parameters for the purposes of building? No one is going to do an all-
atom refinement of their
Dear Crystallographers,
A basic question: what is the equation currently used to combine/merge
multiple measurements of I and sigI? (Or a reference would be fine as well
(or maybe better.))
Thanks,
Jacob Keller
***
Jacob Pearson Keller
Northwestern
Hi, I was looking around for programs that display space group symmetry
information and could not find any but perhaps i am lost for valuable or
relevant keywords.
I found two references TABLES and CRYST, but are there other alternatives
that are more recent, or that can run on more common
Hi Karthik,
you can use this:
http://cci.lbl.gov/servers/cctbx/explore_symmetry.html
and you may find this useful too:
http://cci.lbl.gov/servers/index.html
Pavel.
On 3/16/10 5:11 PM, Karthik S wrote:
Hi, I was looking around for programs that display space group
symmetry information and
On Tue, 16 Mar 2010 20:11:29 -0400, Karthik S biokart...@gmail.com wrote:
Hi, I was looking around for programs that display space group symmetry
information and could not find any but perhaps i am lost for valuable or
relevant keywords.
I found two references TABLES and CRYST, but are there
Dear CCP4BB'ers,
I have received many responses to my inquiry on MRC 2-well plates and
liquid dispensing robots. I also got many messages (and phone calls)
from product vendors, and received a batch of the latest MRC plates from
Swiss-Ci, the original manufacturer of this plate. This latest
20 matches
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