Re: [ccp4bb] Rfree going up after refinement

2018-04-21 Thread Diana Tomchick
) From: CCP4 bulletin board <CCP4BB@JISCMAIL.AC.UK> on behalf of Eleanor Dodson <176a9d5ebad7-dmarc-requ...@jiscmail.ac.uk> Sent: Saturday, April 21, 2018 1:36 AM To: CCP4BB@JISCMAIL.AC.UK Subject: Re: [ccp4bb] Rfree going up after refinement I real

Re: [ccp4bb] Rfree going up after refinement

2018-04-21 Thread Eleanor Dodson
I really need more information to comment properly. However just check that you are using the same reflections for both Rfree calculations. An Rfree of 26% seems low to me from a Se met phased structure at 2.1A - there are usually small corrections to be made, What is the Rwork? Maybe attach the

[ccp4bb] Rfree going up after refinement

2018-04-20 Thread 张士军
Dear all I have got my se-phase structure with ccp4-CRANK2-SAD, and its Rfree is 0.26 when CRANK2 output, but the Rfree is higher to 0.36 when I refine it with refmac or phenix-refinement. does it mean I got a wrong phase, or I didn't got the right parameters when refinement.BTW, the