Re: [ccp4bb] DNA building program

2008-08-12 Thread James Stroud

structure.usc.edu/make-na

James

On Aug 12, 2008, at 3:35 PM, Raja Dey wrote:


Dear Friends,
  Does anyone can refer a reliable program for  
building 3D model of a double stranded straight DNA from sequence?  
Thanking you in advance...

Raja



Unlimited freedom, unlimited storage. Get it now


--
James Stroud
UCLA-DOE Institute for Genomics and Proteomics
611 Charles E. Young Dr. S.
Los Angeles, CA  90095

http://www.jamesstroud.com





Re: [ccp4bb] DNA building program

2008-08-12 Thread Mensur Dlakic
Depends for what you need the program. If you want rigorously built DNA 
molecule, I suggest 3DNA:


http://rutchem.rutgers.edu/~xiangjun/3DNA/

I have a program that may be better for visualizing built DNA molecules, 
but is not as rigorous when it comes to reconstructing DNA bases from 
parameters. Here are few screenshots:


http://www.homepage.montana.edu/~mdlakic/software.html

Hope this helps,

Mensur


At 04:35 PM 8/12/2008, Raja Dey wrote:

Dear Friends,
  Does anyone can refer a reliable program for 
building 3D model of a double stranded straight DNA from sequence? 
Thanking you in advance...

Raja



==
| Mensur Dlakic, PhD| Tel: (406) 994-6576|
| Department of Microbiology| Fax: (406) 994-4926|
| Montana State University  | Lab: (406) 994-6237|
| 109 Lewis Hall, P.O. Box 173520   | http://myprofile.cos.com/mensur|
| Bozeman, MT 59717-3520| E-mail: [EMAIL PROTECTED]|
==


Re: [ccp4bb] DNA building program

2008-08-12 Thread William Scott

coot


On Aug 12, 2008, at 3:35 PM, Raja Dey wrote:


Dear Friends,
 Does anyone can refer a reliable program for  
building 3D model of a double stranded straight DNA from sequence?  
Thanking you in advance...

Raja