Re: [COOT] Does Coot 0.9.8.92 (CCP4 build) run on Sonoma

Works for me (CCP4 package install) D -- Dr David C. Briggs CSci MRSB (he/him) Principal Laboratory Research Scientist Signalling and Structural Biology Lab The Francis Crick Institute London, UK Working hours: Mon-Fri 0900-1700 == about.me/david_briggs |

Re: [COOT] Linking two sidechains with a double bond and refining

Hi David, Rob Nicholls gave a talk about AceDrg and link generation at a CCP4 SW a few years ago.. https://www.youtube.com/watch?v=p4oTJ0bjD3M I think this will contain the answers you are looking for. Cheers, David -- Dr David C. Briggs CSci MRSB (he/him) Principal Laboratory Research

Re: [COOT] Coot-1 missing ssm

Hi Charles and Paul, This installer worked exactly as advertised for my Intel MBP. One bug I've come across that I've not seen reported elsewhere is that when dragging atoms when RSR has been activated, as well as dragging the atoms, the model still rotates. Hope this is useful info. Thank

Re: [COOT] Acknowledge Your Appraisal

This looks awfully like a phishing scam. -- Dr David C. Briggs Senior Laboratory Research Scientist Signalling and Structural Biology Lab The Francis Crick Institute London, UK == about.me/david_briggs From: Mailing list for users of COOT Crystallographic Software

[COOT] Core dump on Glycan addition.

when using the same version of coot on OSX. Can anybody suggest a fix? Regards, David [image: David Briggs on about.me] David Briggs about.me/david_briggs http://about.me/david_briggs

Re: [COOT] coot hardware building wrong hand helix

Dear Zhihai Li, Given the relative lack of information supplied - can I just ask a quick crystallography question : how did you phase the data? If you obtained phases from MIR or MAD, are you sure you are using the correct hand of the map? Dave On 25 Feb 2014 01:45, 李智海

[COOT] Output distances from NCS differences

Hello, is there a way to output the distances from the Validate -- NCS Differences command to a text file? Cheers, D David C. Briggs PhD Father, Structural Biologist and Sceptic University of Manchester E-mail:

[COOT] Get Monomer issues under OSX.

Hi all. I'm running the version of coot as obtained from the ccp4.ac.uk website last week, using OSX 10.5.8 My problem is this - I have what appear to be bound, ordered glycerols in my maps - I want to import GOL and use the Ligand fitting routines to help with this. I know I could do this by

Re: [COOT] Get Monomer issues under OSX.

Bernard, Libcheck seems to run fine from command line, and when called from the ccp4i gui. Curious. Dave David C. Briggs PhD Father, Structural Biologist and Sceptic University of Manchester E-mail: david.c.bri...@manchester.ac.uk

Re: [COOT] Get Monomer issues under OSX.

, 2010 at 12:30:43PM +0100, David Briggs wrote: Bernard, Libcheck seems to run fine from command line, and when called from the ccp4i gui. Curious. Dave David C. Briggs PhD Father, Structural Biologist and Sceptic University

Re: [COOT] Feature Request: Notes

Seconded! That is a fantastic idea - so essentially a label assoicated with a feature a set of co-ordinates. D 2009/3/11 Dirk Kostrewa kostr...@lmb.uni-muenchen.de: Dear Paul, this is a feature request: I would like to attach notes to the structure, like water or sodium, alternative

Re: [COOT] Coot 0.5 released

OSX 10.4 Intel??? If that's not being done elsewhere, I can volunteer to give it a go... Cheers, Dave 2008/9/24 Tim Kirk [EMAIL PROTECTED]: We got one here at YSBL. Let me know what to do and I'll set it doing it. Given it came from Paul Kevin's grant from memory it seems only fair to