restraints. Paul, could you
please look into this?
Best regards,
Keitaro
On Wed, 22 Nov 2023 at 19:53, Christian Roth wrote:
>
> Ah yes, sorry forgot that crucial information. It is Coot 0.9.8.92 Marina
> Bay. Installed as part of CCP4 8.0. Currently on updated 16.
>
> Best
&
Dear Christian,
What is the version of Coot, and how did you install it?
Best regards,
Keitaro
On Wed, 22 Nov 2023 at 19:02, Christian Roth wrote:
>
> Hi,
> I have a sugar ligand with a Sia linked alpha 23 to Gal. Refinement with
> Refmac of phenix works and the link is recognized from the
As Lucrezia explained, group names in the monomer library are fixed
after Acedrg. To be a peptide, a monomer should have
N/CA/C/O/OXT/H/H2/H3 atoms with the proper bonding pattern. If the
atom names are different, they will be demoted to NON-POLYMER and an
alias will be added. This was partly
Dear Helge,
> G533 in chain a
> C823 in chain A
> G1186 in chain A
> C1147 in chain A
> A614 in chain a
These are actually what I just reported to Paul - the "DNA-SER" link
problem, while some of them are DNA-TYR, but the same issue.
Coot tries to make these links when RNA/DNA residues are close
I tried this again - now using add_molecular_symmetry(). Last time
(when 0.9.6 was released) I tried
add_molecular_symmetry_from_mtrix_from_self_file() and it did not
work; it was apparently because translation part of MTRIX is taken as
2 times origin value.
Now I give origin of symmetry to
Dear all,
I found that it worked if I used GNOME instead of KDE.
It's strange to me because it works in KDE of older version of openSUSE.
But now there's no problem.
Thanks,
Keitaro
2011/7/20 Keitaro Yamashita yamash...@castor.sci.hokudai.ac.jp:
Dear COOT developers and users,
I compiled
