On 22/11/2023 14:02, Keitaro Yamashita wrote:
CAUTION: This email originated from outside of the LMB.
Do not click links or open attachments unless you recognize the sender and know
the content is safe.
.-owner-c...@jiscmail.ac.uk-.
Great, you are using the very latest CCP4 (with the latest
Hi Keitaro,
thanks for confirming this. Strange that if found a link to C1? It needs to
be C2, because C1 is not part of the ring. I tried with pdb-ID 6xtg and it
also didn't work.
Yes, refmac identified the link and lists it in the log file.
Best Regards
Christian
On Wed, Nov 22, 2023 at 3:03
Great, you are using the very latest CCP4 (with the latest monomer
library). I suppose Refmac properly identified the "ALPHA2-3" link
which should also appear in the PDB header (LINKR).
Using Coot, I just tried PDB 2osx which includes the ALPHA2-3 link
between GAL (B/2) and SIA (B/3). As you
Ah yes, sorry forgot that crucial information. It is Coot 0.9.8.92 Marina
Bay. Installed as part of CCP4 8.0. Currently on updated 16.
Best
Christian
On Wed, Nov 22, 2023 at 11:14 AM Keitaro Yamashita <
keitaro-yamash...@g.ecc.u-tokyo.ac.jp> wrote:
> Dear Christian,
>
> What is the version of
Dear Christian,
What is the version of Coot, and how did you install it?
Best regards,
Keitaro
On Wed, 22 Nov 2023 at 19:02, Christian Roth wrote:
>
> Hi,
> I have a sugar ligand with a Sia linked alpha 23 to Gal. Refinement with
> Refmac of phenix works and the link is recognized from the
