Hi Andrius,
On Tue, Apr 16, 2024 at 04:52:01PM +0300, Andrius Merkys wrote:
> On 2024-04-16 15:04, Nilesh Patra wrote:
> > I suppose you meant "RM" instead of "BTS" here. Thanks for filing a report.
>
> No, I meant filing a BTS bug, which I did file a
On Tue, Apr 16, 2024 at 02:40:40PM +0300, Andrius Merkys wrote:
> On 2024-04-16 03:23, Aaron M. Ucko wrote:
> > s390x is a 64-bit architure, so the time_t64 transition was a pure
> > formality there. (The old s390 architecture would have been affected
> > but retired several years ago.)
>
> Oh,
Control: severity -1 wishlist
Hi,
maude has been -rm'ed on 32-bit archs as per
https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1068766
So this issue is now moot and I am downgrading the severity.
On Thu, Apr 11, 2024 at 07:53:08AM +0200, Andreas Tille wrote:
> Hi,
>
> Am Wed, Apr 10, 2024
On Wed, Apr 10, 2024 at 05:59:13PM +0200, Karsten Hilbert wrote:
> Am Wed, Apr 10, 2024 at 09:15:02PM +0530 schrieb Nilesh Patra:
>
> > since no-one uses med packages on these archs[1].
>
> That's certainly not so.
OK, I should have chosen different words - will do so nex
Package: ftp.debian.org
Severity: normal
X-Debbugs-Cc: ma...@packages.debian.org, ti...@debian.org,
sramac...@debian.org, debian-med@lists.debian.org
Control: affects -1 + src:maude
User: ftp.debian@packages.debian.org
Usertags: remove
Hi,
maude FTBFS on 32-bit archs and the temporary fix
On Sun, Apr 07, 2024 at 07:45:33PM +0530, Nilesh Patra wrote:
> Hi,
>
> Maude fails to build on armhf/arm32 arch with:
>
> In file included from timeManagerSymbol.cc:64:
> timeActions.cc: In member function ‘void
> TimeManagerSymbol::getTimeS
Hi,
Maude fails to build on armhf/arm32 arch with:
In file included from timeManagerSymbol.cc:64:
timeActions.cc: In member function ‘void
TimeManagerSymbol::getTimeSinceEpoch(FreeDagNode*,
ObjectSystemRewritingContext&)’:
timeActions.cc:43:41: error: call of overloaded
On Sat, Mar 30, 2024 at 02:26:07PM +0100, Sébastien Jodogne wrote:
> > For some reason, this is not taking needs-sudo restriction well. Can you
> > try once with this
> > patch (no need to re-compile) and let me know if that helps?
> >
> > diff --git a/debian/tests/control b/debian/tests/control
Hi Sébastien,
On Sat, Mar 30, 2024 at 12:51:56PM +0100, Sébastien Jodogne wrote:
> On 3/30/24 12:41, Nilesh Patra wrote:
> > > Once compilation is done, how can I execute autopkgtest? I have tried
> > > multiple variations, including the most basic:
> > >
>
On Sat, Mar 30, 2024 at 12:28:45PM +0100, Sébastien Jodogne wrote:
> Hello,
>
> On 2/1/24 17:36, Nilesh Patra wrote:
> > On Thu, Feb 01, 2024 at 01:55:21PM +0100, Sébastien Jodogne wrote:
> > > Even if I'm tagged as the maintainer of "orthanc-python", I don'
On 28 March 2024 7:21:01 pm IST, "Michael R. Crusoe" wrote:
>Alas this is an involved process. If we have to do it a lot, it would be nice
>if someone writes a tool to automate any aspect of the above!
>
>---
>
>Fweh, that's a long email. Please do share your feedback here
There are also
On Sun, Feb 25, 2024 at 08:32:52PM +0100, Sascha Steinbiss wrote:
> Hmm, I never had that. The buildd builds also seem to pass this step with no
> errors. I am wondering if nox wants to pull anything from PyPI using pip and
> either your DNS configuration is weird or your build container cannot
On Sat, Feb 10, 2024 at 06:48:03PM +0100, Karsten Hilbert wrote:
> Dear list members,
>
> Debian packaging CI is sending me this:
>
> > gnumed-client 1.8.18+dfsg-1 is marked for autoremoval from testing on
> > 2024-03-15
> >
> > It (build-)depends on packages with these RC bugs:
> > 1062249:
On Thu, Feb 01, 2024 at 01:55:21PM +0100, Sébastien Jodogne wrote:
> Even if I'm tagged as the maintainer of "orthanc-python", I don't know
> how autopkgtest/flaky works (I haven't implemented such tests by
> myself).
This is the script that runs for tests:
Hi Matthias,
You're currently listed as an Uploader for neuron and nmodl package
which are maintained in the science team.
Since both of them look related to medicine/bioinformatics, do you
have any objection if they are moved to med team instead?
Best,
Nilesh
signature.asc
Description: PGP
On 12/29/2023 6:31 PM IST Komolehin Israel wrote:
> > On Fri, 29 Dec 2023 at 1:36 PM, Nilesh Patra wrote:
> > On Fri, Dec 29, 2023 at 05:57:13PM +0530, Nilesh Patra wrote:
> > > Hi Israel,
> > >
> > > On Fri, Dec 29, 2023 at 01:01:47PM +0100, Ko
Hi Israel,
> On 01/01/2024 2:31 AM IST Komolehin Israel wrote:
> My name is Israel, an Outreachy intern under the mentorship program of
> Andreas Tille and Nilesh Patra which started on December 4th, 2023.
>
> Here is the list of the packages I have contribute to:
>
>
> On 12/30/2023 4:21 PM IST Andreas Tille wrote:
>
>
> Am Sat, Dec 30, 2023 at 01:19:32PM +0530 schrieb Nilesh Patra:
> > > Sure. Feel free to implement this - I'm just not available for the next
> > > couple of days.
> >
> > This is the currently
On Fri, Dec 29, 2023 at 02:04:34PM +0100, Andreas Tille wrote:
> Am Fri, Dec 29, 2023 at 11:35:41AM +0530 schrieb Nilesh Patra:
> > On a brief look, it does not seem easy and would mean maintaining a debian
> > specific
> > patch for ever which maybe non-trivial for future v
Hi,
Instead of sending each bug fix mail to the list, I thought of sending
a consolidated list instead, for the advent BSP, starting Dec 1.
+--+--+---+
| #1058558 | seqkit | RC|
+--+--+---+
| #1046668 | seqkit
On Fri, Dec 29, 2023 at 05:57:13PM +0530, Nilesh Patra wrote:
> Hi Israel,
>
> On Fri, Dec 29, 2023 at 01:01:47PM +0100, Komolehin Israel wrote:
> > I worked on the Xpore package by providing autopkgtest and embedding test
> > data. CI was successful.
> >
> > Thi
Hi Israel,
On Fri, Dec 29, 2023 at 01:01:47PM +0100, Komolehin Israel wrote:
> I worked on the Xpore package by providing autopkgtest and embedding test
> data. CI was successful.
>
> This closes #1035276 bug.
>
> I look forward to its review and upload.
I have two comments:
* Add in the
On Thu, Dec 28, 2023 at 10:28:26PM +0100, Andreas Tille wrote:
> Am Thu, Dec 28, 2023 at 03:28:54PM +0530 schrieb Nilesh Patra:
> >
> > Fixed the build. Now it fails at dh_missing due to python stuff not being
> > installed.
> > I am not sure if you want to creat
On Thu, Dec 28, 2023 at 08:15:58AM +0100, Andreas Tille wrote:
> Hi,
>
> libargparse was accepted by ftpmaster. Now meson code needs to be
> adjusted to create a proper cmake input file to use the Debian packaged
> version of libargparse (may be even that needs some cmake helper to be
> detected
On Tue, Nov 28, 2023 at 05:54:30PM +0100, Andreas Tille wrote:
> I wonder whether some people from the community might be able to join
> our attempt to get this issue fixed and raise their voice inside the
> Github issue (or use other channels) to get this finally fixed. I guess
> the problem
Hi,
On Thu, Nov 02, 2023 at 05:27:22PM +0100, Andreas Tille wrote:
> its autumn so we should prepare for winter. For Debian Med winter is
> the time where we usually do our in person meeting. The last meetings
> were in a perfectly fitting location in Berlin and I for myself would
> be fine to
Gentle ping?
On 4 November 2023 4:23:58 pm IST, Nilesh Patra wrote:
>On Sat, Nov 04, 2023 at 11:33:52AM +0100, Sébastien Jodogne wrote:
>> > I tried doing something similar however the test still seems to fail.
>> > The failing job can be found at[3].
>> > [3] htt
On Sat, Nov 04, 2023 at 11:33:52AM +0100, Sébastien Jodogne wrote:
> > I tried doing something similar however the test still seems to fail.
> > The failing job can be found at[3].
> > [3] https://salsa.debian.org/med-team/orthanc-python/-/jobs/4887512
>
> The log file of Orthanc indicates that
On Tue, Oct 31, 2023 at 10:58:31AM +0100, Sébastien Jodogne wrote:
> This error indicates that two instances of Orthanc are running at the same
> time, most probably because the "orthanc" Debian service is not stopped at
> the beginning of the test by autopkgtests.
>
> I indeed do not see any
On Fri, Oct 20, 2023 at 02:43:57PM +0200, Santiago Vila wrote:
> Thank you, Nilesh!
>
> Committed the fix and uploaded the package.
Awesome!
> One more question: I didn't get the hang of gbp to build
> the package at first, so I put the orig.tar.xz below the working
> directory and used good
On Fri, Oct 20, 2023 at 01:01:13PM +0200, Santiago Vila wrote:
> I asked Andreas if it was acceptable to join this team
> just to work on minor QA issues, and he said yes,
> so here I am :-)
Welcome!
> My question: Would it be acceptable to do this instead?
>
> - One commit fixing the bug and
[[ Switching to new js team list ]]
Hi Andrius,
On Thu, Sep 28, 2023 at 10:28:31AM +0300, Andrius Merkys wrote:
> I ended up never using shiny-server and/or
> node-shiny-server, but with the responsibility for its dependencies. I would
> be happy if someone from Med or JS teams could step up and
Hi Maarten,
Not sure why, but the package does not even compile for me in a clean unstable
chroot.
It chokes with:
| error: Could not create output directory
/<>/obj-x86_64-linux-gnu/docs/xml
| Doxygen version used: 1.9.4
| Exiting...
| make[4]: *** [docs/CMakeFiles/Sphinx.dir/build.make:123:
On Fri, Aug 25, 2023 at 06:29:34PM +0200, Niels Thykier wrote:
> Nilesh Patra:
> > On Fri, Aug 25, 2023 at 05:17:47PM +0200, Niels Thykier wrote:
> > > [...]
> >
> > I had figured out this already, but conffile.lex.c does not exist in the
> > project, it is gen
On Fri, Aug 25, 2023 at 05:17:47PM +0200, Niels Thykier wrote:
> Nilesh Patra:
> >
> >
> > On 25 August 2023 1:47:26 pm IST, Nilesh Patra wrote:
> > > On Wed, 26 Jul 2023 21:52:17 +0200 Lucas Nussbaum
> > > wrote:
> > > > Source: eegd
On 25 August 2023 1:47:26 pm IST, Nilesh Patra wrote:
>On Wed, 26 Jul 2023 21:52:17 +0200 Lucas Nussbaum wrote:
>> Source: eegdev
>> Version: 0.2-6
>> Severity: serious
>> > In file included from conffile.lex.c:242:
>> > ../../lib/stdio.h:64:3: error
[[ Copying the mailing list ]]
On Fri, Aug 25, 2023 at 01:57:47PM +0530, RAKESH TIWARI wrote:
> Dear Nilesh Sir,
No "sir" please :-)
> I am Rakesh, a bioinformatics postgraduate I have requested Andreas to join
> Debian med development as a volunteer, He suggested me to go into MoM page
> and
On Wed, 26 Jul 2023 21:52:17 +0200 Lucas Nussbaum wrote:
> Source: eegdev
> Version: 0.2-6
> Severity: serious
> > In file included from conffile.lex.c:242:
> > ../../lib/stdio.h:64:3: error: #error "Please include config.h first."
> >64 | #error "Please include config.h first."
> > |
Control: retitle -1 RM: logol -- ROM; unmaintained package; low popcon
Control: reassign -1 ftp.debian.org
Control: severity -1 normal
Hi FTP team,
On Wed, 19 Jul 2023 08:13:37 +0200 olivier sallou
wrote:
> Le mer. 19 juil. 2023, 06:58, Andreas Tille a écrit :
>
> > Hi Olivier,
> >
> > Am
On Sun, Jul 16, 2023 at 03:43:10PM +0200, Andreas Tille wrote:
> > (Combining these into one would likely fix the bug as well)
>
> Feel free to fix it.
This was indeed the fix. I've merged B-D with B-D-I and uploaded.
> > [1]: https://lists.debian.org/debian-devel/2023/07/msg00188.html
Best,
Hi,
There has been a recent pre-MBF mail sent[1] to -devel and I saw that is has
jaligner mentioned there.
I see in d/control that it vendors only one arch:all binary package (jaligner),
and it has both Build-Depends and Build-Depends-Indep, and I'm confused why
that is so?
What exactly is
On Sat, Jul 15, 2023 at 01:46:57PM +0200, Sébastien Jodogne wrote:
> On another topic, it looks like I've been kicked off the
> "debian-med-packaging" mailing list, and I'm unable to register back using
> my "s.jodo...@orthanc-labs.com" e-mail. Is there currently a known issue on
> the Debian
On Thu, Jul 13, 2023 at 09:42:01PM +0200, Andreas Tille wrote:
> Hi folks,
>
> before I switch of my laptop for today I'd like to hand over some
> remaining build time error in toil:
On running the command that the test tries to run by hand, I see:
| Traceback (most recent call last):
| File
On Thu, Jul 13, 2023 at 05:53:51PM +0200, Andreas Tille wrote:
> Hi,
>
> I could need some help for uncalled, where build time test fails with
Seems to be because of
https://github.com/skovaka/UNCALLED/commit/8a8585c8b2e3bf6748c231fb679888433bd44687
Fix pushed to salsa.
Best,
Nilesh
On Mon, Jul 10, 2023 at 10:03:56AM +0200, Andreas Tille wrote:
> numbers 1 (=prefered),
> 2 (=OK), 3 (=I might join), 4 (=its hard vor me to join) of 5 (=I will
> not be able to join)
Friday
[3] 17 UTC
[4] 18 UTC
[5] 19 UTC
Saturday
[2] 17 UTC
[1] 18 UTC
On 6 July 2023 2:34:50 pm IST, Andreas Tille wrote:
>last time we were wondering whether a monthly video meeting is more
>sensible. Its not that much we need to talk about (in case there is
>something we can perfectly do ad hoc meetings) and may be its enough to
>meet only once a month. If
On Thu, Jul 06, 2023 at 05:23:04PM +0200, César Pomar wrote:
> > This line
> >
> >
> https://salsa.debian.org/med-team/veryfasttree/-/commit/71dd640efa995cf14239534cac5fff38a93b593b#66a85d79424c0df9294d31905896b99d0e8b06b7_0_16
> >
> > Seems wrong. There's no "veryfasttree-sse" binary. You need to
On Thu, Jul 06, 2023 at 04:53:11PM +0200, César Pomar wrote:
> Thank Nilesh for the corrections. I have taken them into account in the
> last implementation.
This line
On Wed, Jul 05, 2023 at 09:16:38PM +0200, César Pomar wrote:
> I am still considering whether it would be necessary to include all
> possible
> compilations. Perhaps with only SSE2, AVX2, and AVX512F, it would be
> sufficient, or even just SSE2 and AVX2.
I'd recommend building for all levels, if
On Tue, Jul 04, 2023 at 10:57:48PM +0200, César Pomar wrote:
> What concerns me the most is not the way SSE, AVX256, or AVX512 are
> manually
> used in the code, even if a portable method is used. The performance of a
> binary compiled without AVX will be worse because the compiler won't be
> able
On Sat, Jun 24, 2023 at 05:41:08PM +0200, Andreas Tille wrote:
> Am Sat, Jun 24, 2023 at 03:56:19PM +0530 schrieb Nilesh Patra:
> > Otherwise, do you want phylonium to support only 64-bit archs, and
> > should we ask for removal of 32-bit entirely?
>
> In case of leaf pack
Hi Fabian,
I happened to update phylonium to 1.7 and uploaded, sometime back.
Unfortunately it fails on 32 bit archs:
https://buildd.debian.org/status/package.php?p=phylonium=1.7-1
with:
| process.cxx: In lambda function:
| process.cxx:222:39: error: no matching function for call to
Quoting Donald Norwood (cnote) from Matrix:
> Hello team!
> We received a press inquiry asking about the contents of the Med Blend in
> bookworm, and
> I wonder if here is the best place to ask or find someone who could answer a
> few questions?
> (Email may work best as this matrix thing is new
On 06/17/2023 11:21 AM IST Andreas Tille wrote:
> > > '''
> > > 1.10. "Research Purposes" means use for internal research and not intended
> > > for or directed towards commercial advantages or monetary compensation;
> > > provided, however, that monetary compensation does not include sponsored
>
Hi,
I'm dropping this mail to draw the attention of anyone who's interested in
updating pychopper.
While going through the list of outdated packages, I found pychopper as a
candidate. Unfortunately
upstream seems to have modified the license in a way that makes in non-dfsg
compliant.
In the
On Wed, May 24, 2023 at 11:28:13AM +0200, Pierre Gruet wrote:
> Le 24/05/2023 à 08:25, Andreas Tille a écrit :
> >
> > https://salsa.debian.org/med-team/community/communication/-/blob/master/releasenotes/bookworm/release-notes.patch
> >
> > Please review and comment on it (or just push fixes
Hi,
On Mon, Jan 30, 2023 at 09:12:57AM +0100, Andreas Tille wrote:
> I made some tiny steps forward ("only" 84 failures instead of 89 when I
> wrote my first mail) in the numpy 1.24 migration for 32bit architectures
> but I'm facing issues I do not have a real clue for. In
>
>
>
Hi,
On Thu, Jan 19, 2023 at 04:54:37PM -0500, Aaron M. Ucko wrote:
> Andreas Tille writes:
>
> >https://salsa.debian.org/med-team/ncbi-igblast/-/jobs/3822434
>
> This compiler crash looks like
> https://gcc.gnu.org/bugzilla/show_bug.cgi?id=108137 , already fixed in
> the gcc-12 branch. I
reassign 1027629 dssp 4.2.0a-1
fixed 1027629 4.2.1-1
close 1027629
stop
[ CC'ed control@, please drop that address if you reply]
On Mon, Jan 02, 2023 at 09:55:29AM +0100, Maarten L. Hekkelman wrote:
> This should be fixed now.
Thanks for the quick resolution, I am closing it then.
One quick
Hi Maarten,
This seems to stem from your latest upload of dssp. Could you consider taking
a look at this one?
Thanks,
Nilesh
On Sun, 1 Jan 2023 15:20:12 +0100 Lucas Nussbaum wrote:
> Source: python-biopython
> Version: 1.80+dfsg-4
> Severity: serious
> Justification: FTBFS
> Tags: bookworm
Package: ftp.debian.org
Severity: normal
User: ftp.debian@packages.debian.org
Usertags: remove
X-Debbugs-Cc: pairto...@packages.debian.org, debian-med@lists.debian.org
Control: affects -1 + src:pairtools
Hi,
pairtools has started to build-depend and also depend on python3-pysam
and pysam is
Hi,
Instead of sending each bug fix mail to the list, I thought of sending
a consolidated list instead, for the advent BSP, starting Dec 1.
Here are the bugs that I have fixed in debian-med team during this time:
╔═╤╤═══╗
║ Bug │ Package│ Severity ║
On 12/23/22 15:07, Maarten L. Hekkelman wrote:
Hi,
Something is going wrong, somewhere. I prepared packages to upgrade libcifpp
and everything depending on it. Pushed some other stuff into testing also as a
preparation and submitted a 'bug' asking for a time slot to transition both
libcifpp
On Thu, Dec 22, 2022 at 04:07:45PM +0100, Pierre Gruet wrote:
> In passing: what do you think of the current RC bug of pplacer? It would
> cause the removal of sepp and tipp which seem to have quite a few users, but
> I am not sure of the direction to take to fix it.
I did take a look at mcl's
Hi Pierre, all,
Recent rebuilds have led to bug reports #1026659 and #1026764 for
aeonbits-owner and capsule-maven-nextflow
respectively.
As you might have guessed, both of them are java packages and I've quite
frankly been unable to figure
out these on my own so far.
Could you please take
On Tue, Dec 20, 2022 at 09:29:38PM +0100, Andreas Tille wrote:
> I've upgraded augur after python3-pyfastx is available. Unfortunately there
> are three remaining errors - two of them definitely related to UTF-8 issues
> the third one possibly[1]
Not exactly UTF-8 I guess, the error also spews
On 5 December 2022 9:24:10 pm IST, Helmut Grohne wrote:
>> Am Mon, Dec 05, 2022 at 05:25:03PM +0530 schrieb Nilesh Patra:
>> > I simply applied patch supplied by Helmut to make build cross-buildable.
>> > Please check Bug#989942 for the explanation and context.
>
&
Hi Andreas,
On 5 December 2022 12:24:23 pm IST, Andreas Tille wrote:
>Am Sun, Dec 04, 2022 at 06:23:13PM -0500 schrieb Aaron M. Ucko:
>> Andreas Tille writes:
>>
>> > Could anybody comment on it / fix it?
>>
>> Per
>>
Hi,
There are a bunch of LTO based bugs that have been filed. The packages
that had "real" issues (as in with the code) with LTO have been fixed.
Now most of what is left is changes in symbols, which fails with
dpkg-gensymbols,
which is just a change with compiler opt, and likely nothing more
On 1 December 2022 12:54:07 pm IST, Andreas Tille wrote:
>Hi folks,
>
>just to give an example of announcing a squashed bug here. ;-)
I wonder if it could be nice to make a wiki page instead and add in bugs there
date-wise if hosting the calendar isn't a possibility?
I'm ok with announcing
On Tue, Nov 29, 2022 at 08:23:59PM +0100, Andreas Tille wrote:
> Hi,
Hi,
> I tried to upgrade spoa but the build[1] fails with
> [...]
> Any idea what might be wrong here would be great.
I did get this rolling past that point but now the build fails due to
d-shlibs, which I am not very familiar
Source: python-biopython
Version: 1.79+dfsg-3
Severity: serious
X-Debbugs-Cc: debian-med@lists.debian.org
Control: block 1024855 by -1
Control: block 1024858 by -1
Hi,
biopython in unstable does not vendor bindings for python3.11, due to which
augur and busco fail their autopkgtest.
Thanks,
On Fri, Nov 25, 2022 at 06:04:29PM +0100, Andreas Tille wrote:
> Hi,
>
> I upgraded rampler to the latest upstream version. CMakeLists.txt
> has changed and I'm not sure whether I've properly adjusted the
> patch. I thinks the error message
>
> CMake Error in CMakeLists.txt:
> Imported
On Wed, Nov 23, 2022 at 09:01:40PM +0100, Andreas Tille wrote:
> python-cobra
It seems like that the interpreter is having trouble referencing the
name variable. I tried using getName instead of that which gets the
test passing but I'm not very sure if it serves the purpose well.
Pushed this
On Fri, Nov 18, 2022 at 10:27:43PM +0100, Étienne Mollier wrote:
> Hi Greg,
>
> Gregory Sharp, on 2022-11-18:
> > Thank you, you are correct! Yahoo blocked your direct e-mail, but it also
> > blocked the one from debian-med which is not good.
>
> Things that happen I guess. For what it's worth
On Thu, Nov 17, 2022 at 10:19:46PM +0100, Étienne Mollier wrote:
> Maarten L. Hekkelman, on 2022-11-17:
> > Looking for an appropriate name I inadvertently created a project on salsa
> > called libcfg. That clashes with a package already in Debian and I'm not
> > allowed to remove that repository
On 11/16/22 18:30, Andreas Tille wrote:
Control: tags -1 pending
Am Wed, Nov 16, 2022 at 05:35:12PM +0530 schrieb Nilesh Patra:
$ debdiff mcl_14-137+ds-9.dsc mcl_22-282+ds-1.dsc 2>/dev/null | wc -l
51040
That's quite a lot of lines. Something definitely changed.
And I found out w
On Wed, Nov 16, 2022 at 05:30:21PM +0530, Nilesh Patra wrote:
> On Wed, Nov 16, 2022 at 11:25:02AM +0100, Andreas Tille wrote:
> > Am Tue, Nov 15, 2022 at 09:16:53PM +0100 schrieb Paul Gevers:
> > > 2022/11/15 09:16:56 Cannot find the mcxdeblast executable, please ensure
>
On Wed, Nov 16, 2022 at 11:25:02AM +0100, Andreas Tille wrote:
> Am Tue, Nov 15, 2022 at 09:16:53PM +0100 schrieb Paul Gevers:
> > 2022/11/15 09:16:56 Cannot find the mcxdeblast executable, please ensure its
> > in your PATH
The error is here ^^^
mcl has stopped vendoring mxcdeblast since your
On 6 November 2022 7:44:45 pm IST, Nilesh Patra wrote:
>On Sun, Nov 06, 2022 at 03:45:30PM +0530, Nilesh Patra wrote:
>> On Fri, Nov 04, 2022 at 10:23:25PM +0100, Andreas Tille wrote:
>> > Hi,
>> >
>> > I tried to update the Debian package of protein
On Sun, Nov 06, 2022 at 03:45:30PM +0530, Nilesh Patra wrote:
> On Fri, Nov 04, 2022 at 10:23:25PM +0100, Andreas Tille wrote:
> > Hi,
> >
> > I tried to update the Debian package of proteinortho to 6.1.2 but I'm
> > running
> > into a failure:
> > [
On Fri, Nov 04, 2022 at 10:23:25PM +0100, Andreas Tille wrote:
> Hi,
>
> I tried to update the Debian package of proteinortho to 6.1.2 but I'm running
> into a failure:
> [...]
This was an issue w/ building in parallel. I have fixed it, but the last test in
autopkgtest does not work, which tries
On Sun, Nov 06, 2022 at 04:12:18AM +0530, Nilesh Patra wrote:
> On Fri, Nov 04, 2022 at 11:08:05PM +0100, Andreas Tille wrote:
> > I injected the new version of kalign into Git. Unfortunately the file
> > layout has changed and the files that were patched in the currently
> >
On Fri, Nov 04, 2022 at 11:08:05PM +0100, Andreas Tille wrote:
> I injected the new version of kalign into Git. Unfortunately the file
> layout has changed and the files that were patched in the currently
> packaged version do not exist any more[1]. It would be great if you
> could update the
Package: ftp.debian.org
Severity: normal
X-Debbugs-Cc: debian-med@lists.debian.org
Hi,
nthash has recently started to build-depend on btllib, which is
not supported on 32-bit and probably on big-endian systems as well.
The upstream has also confirmed the same:
Package: ftp.debian.org
Severity: normal
X-Debbugs-Cc: debian-med@lists.debian.org
Hi,
libnthash-dev binary package from src:nthash has changed its arch
from all to any, because it now also ships a static lib along with
it, hence please remove the arch:all binary for this binary package.
Hi,
I suppose sprints in 2021 and 2022 have been virtual so far due to COVID.
There were some COVID related sprints in 2020 as well.
Is there a possibilty to have an in-person debian-med sprint in 2023?
Would someone be interested in it, or so?
Thanks!
--
Best,
Nilesh
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On Thu, Oct 27, 2022 at 11:37:39AM +0200, Andreas Tille wrote:
> Hi Andrius,
>
> Am Thu, Oct 27, 2022 at 12:00:59PM +0300 schrieb Andrius Merkys:
> > I have just pushed a fix. Please check if that works for you as well.
>
> Hmmm, this results in
I pushed something via which I get:
| uscan
On Wed, Oct 26, 2022 at 11:56:28AM +0200, Martin Uecker wrote:
> Thank you! It seems this is working correctly
> on all archs.
>
> I also finalized the bart-view update. Can
> you upload it as well?
I had done so, thanks!
--
Best,
Nilesh
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Description: PGP signature
On Tue, Oct 25, 2022 at 12:07:46PM +0200, Andreas Tille wrote:
> Hi Nilesh,
>
> Am Tue, Oct 25, 2022 at 02:49:25PM +0530 schrieb Nilesh Patra:
> > On Tue, Oct 25, 2022 at 09:36:33AM +0200, Andreas Tille wrote:
> > > Hi,
> > >
> > > the new versio
On Tue, Oct 25, 2022 at 09:36:33AM +0200, Andreas Tille wrote:
> Hi,
>
> the new version of nthash needs btllib which was luckily accepted very
> quickly by ftpmaster. Now I "just" need to declare in CMakeLists.txt
> that the Debian packaged btllib should be used and as usually I failed
> in
On Mon, Oct 24, 2022 at 09:20:21PM +0200, Martin Uecker wrote:
> Am Dienstag, den 25.10.2022, 00:41 +0530 schrieb Nilesh Patra:
> > Hello,
> >
> > On Mon, Oct 24, 2022 at 08:39:33PM +0200, Martin Uecker wrote:
> > > Hi Andreas and all,
> > >
> > >
Hello,
On Mon, Oct 24, 2022 at 08:39:33PM +0200, Martin Uecker wrote:
>
> Hi Andreas and all,
>
> I updated the package and turned off some unit tests on
> i386 for now (and turned on other tests and made some
> other changes).
>
> If you or somebody else could sponser an upload, this
> would
Hi James,
On Wed, Oct 12, 2022 at 09:47:04AM +0100, James Bonfield wrote:
> On Wed, Oct 12, 2022 at 01:30:40AM +0530, Nilesh Patra wrote:
> > On Thu, Oct 06, 2022 at 01:59:23AM +, John Marshall wrote:
> > > If you omitted these internal symbols, there would be no problem
Hi,
On Thu, Oct 06, 2022 at 01:59:23AM +, John Marshall wrote:
> On 4 Oct 2022, at 15:31, Nilesh Patra wrote:
> > The thing that was causing failures on !amd64 was that there were amd64
> > specific symbols in debian/libhtscodecs2.symbols that were not matching on
>
On 10 October 2022 11:50:14 am IST, Andreas Tille wrote:
>> If no one gets to it, asking for removal is a sensible option. It otherwise
>> imho becomes another time sapping package that no one cares about much.
>
>There was no volunteer to pick up the gcc-12 port of this package. So
>it
On Fri, Oct 07, 2022 at 03:18:36PM +0200, Andreas Tille wrote:
> > Please upload if it looks ok to you.
>
> Is there any reason to stick to gcc-10. I'm not sure when this
> GCC version will be removed - but sooner or later this will be
> the case.
Becasue nvcc (This is a non-free compiler by
Hi,
I am on a VAC right now but happened to see this.
On Tue, Oct 04, 2022 at 01:38:49PM +, John Marshall wrote:
> On 1 Oct 2022, at 07:21, Nilesh Patra wrote:
> > I have fixed a bunch of things with htscodecs and htslib, both
> > of which were not building on !a
On Fri, Sep 30, 2022 at 09:52:55PM +0200, Andreas Tille wrote:
> Am Fri, Sep 30, 2022 at 02:46:38PM + schrieb Nilesh Patra:
> >
> > I have just pushed a fix, which hopefully should fix this. You might want to
> > re-upload.
>
> I can't do this before Tues
On 30.09.2022 20:00, Andreas Tille wrote:
Hi,
[...]
Strangely enough the autopkgtest is failing[4] (which was not the case
in my
local build.) Could anybody have a look?
I have just pushed a fix, which hopefully should fix this. You might
want to re-upload.
BTW, I noticed that the
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