Re: Nextflow - have just used it on our HPC cluster and liked it

Hi Steffen, Le 05/05/2023 à 22:16, Steffen Möller a écrit : Hello, I must admit that I am rather impressed - a series of images were auto-downloaded to function together with singularity and this then worked on a test data collection of the workflow. So, with singularity (or docker) in

Aw: Re: Nextflow - have just used it on our HPC cluster and liked it

> Gesendet: Montag, 08. Mai 2023 um 08:45 Uhr > Von: "Charles Plessy" > An: debian-med@lists.debian.org > Betreff: Re: Nextflow - have just used it on our HPC cluster and liked it > > Hi Steffen and everybody, > > I also use Nextflow at work, and indeed, it makes it very easy to run a >

Re: Nextflow - have just used it on our HPC cluster and liked it

On 08/05/2023 07:45, Charles Plessy wrote: [...] In bioconda you have no idea whether sed is from GNU of from busybox unless you try it or dig for a package recipe in GitHub... Hi, Charles. In fact, an Anaconda/Bioconda 'env' is little more than defined shell environment variables and a

Re: Nextflow - have just used it on our HPC cluster and liked it

Hi Steffen and everybody, I also use Nextflow at work, and indeed, it makes it very easy to run a pipeline many times. Also, Nextflow is a single Java executable, which makes it easy to deploy anywhere Java is already installed. You probably also saw the nf-core repository of modules and