Re: svn commit: r1298588 - /commons/proper/codec/trunk/src/test/java/org/apache/commons/codec/language/NysiisTest.java

2012-03-09 Thread Thomas Neidhart
On 03/09/2012 12:55 AM, Gary Gregory wrote: This is why I added the 'trueLength' (lame name?) ivar because that seems like a reasonable toggle after reading the Wikipedia entry. I changed it locally to 'cutOff', would you agree with this name change? Thomas

Re: svn commit: r1298588 - /commons/proper/codec/trunk/src/test/java/org/apache/commons/codec/language/NysiisTest.java

2012-03-09 Thread Thomas Neidhart
On 03/09/2012 07:58 PM, Gary Gregory wrote: That's not a great name either :( Wikipedia says: If longer than 6 characters, truncate to first 6 characters. (only needed for true NYSIIS, some versions use the full key) What it does is truncate to 6 but that is a pretty functional

Re: [ANNOUNCE] Commons Math version 3.0 is released

2012-03-12 Thread Thomas Neidhart
2012/3/12 Sébastien Brisard sebastien.bris...@m4x.org Hi, I was unable to download the binaries of this release from the website. Downloading the source works fine. Maybe I did something wrong, could anyone else check? Did not work for me too, the reason is the link is wrong, the -bin

[lang] Longest common substring / Suffix Tree

2012-03-12 Thread Thomas Neidhart
Hi, on the weekend, I started to work on issue LANG-680 (https://issues.apache.org/jira/browse/LANG-680), which is about adding support for finding the longest common substring of a set of Strings. Suffix Trees are a standard data structure to efficiently solve this problem, and I created a

Re: [MATH] Does website really need Javadoc for versions prior to 2.2?

2012-03-13 Thread Thomas Neidhart
On Tue, Mar 13, 2012 at 11:28 AM, Gilles Sadowski gil...@harfang.homelinux.org wrote: On Mon, Mar 12, 2012 at 08:22:27PM +0100, Luc Maisonobe wrote: Le 12/03/2012 16:50, sebb a écrit : In addition to Javadoc for 3.0 and 2.2, the website still offers the following: I have found another

Re: [lang] Longest common substring / Suffix Tree

2012-03-13 Thread Thomas Neidhart
On 03/13/2012 08:55 AM, Luc Maisonobe wrote: Le 13/03/2012 00:53, James Carman a écrit : A lot of bioinformaticians would love us if we added this! I picked this topic up as I find it interesting to myself and it would be a useful addition for many other people too I guess, but from what I have

Re: svn commit: r1301220 - /commons/sandbox/graph/trunk/src/main/java/org/apache/commons/graph/export/

2012-03-15 Thread Thomas Neidhart
On 03/15/2012 10:50 PM, Simone Tripodi wrote: Hi Thomas! can I kindly ask you please to help me on merging modifications on /trunk to the experimental branch? I completed the drop the markers work but I still need to complete the exporters... Hope you can help, thanks in advance! Hi

[graph] exporter migration in branch

2012-03-16 Thread Thomas Neidhart
Hi, I have looked into the issue with the graph exporters in the branch, and as we now store any kind of object as Vertex / Edge, it is not obvious how to export such objects. When looking at something like tinkerpop/blueprints, they have a PropertyGraph that can store arbitrary properties for

Re: svn commit: r1301719 - /commons/proper/codec/trunk/src/changes/changes.xml

2012-03-16 Thread Thomas Neidhart
On 03/16/2012 08:48 PM, ggreg...@apache.org wrote: Author: ggregory Date: Fri Mar 16 19:48:48 2012 New Revision: 1301719 URL: http://svn.apache.org/viewvc?rev=1301719view=rev Log: Set issue to add, not fix. Modified: commons/proper/codec/trunk/src/changes/changes.xml Modified:

Re: svn commit: r1301719 - /commons/proper/codec/trunk/src/changes/changes.xml

2012-03-16 Thread Thomas Neidhart
On 03/16/2012 08:59 PM, Gary Gregory wrote: On Fri, Mar 16, 2012 at 3:52 PM, Thomas Neidhart thomas.neidh...@gmail.comwrote: On 03/16/2012 08:48 PM, ggreg...@apache.org wrote: Author: ggregory Date: Fri Mar 16 19:48:48 2012 New Revision: 1301719 URL: http://svn.apache.org/viewvc?rev

Re: svn commit: r1301719 - /commons/proper/codec/trunk/src/changes/changes.xml

2012-03-16 Thread Thomas Neidhart
On 03/16/2012 09:54 PM, Gary Gregory wrote: not exactly, there is a mistake ;-) CODEC-63 (NYSIIS) was initially reported (with patch) by Henri. CODEC-121 (QuotedPrintableCodec) was reported by javajohn. I did enquire myself for a due-to but rather giving the correct one for NYSIIS to

Re: [codec] Release 1.7

2012-03-17 Thread Thomas Neidhart
On 03/16/2012 08:53 PM, Gary Gregory wrote: Hi All: FYI: I am thinking about a 1.7 release soon to pick up 3 fixes and one new feature: https://issues.apache.org/jira/secure/ReleaseNote.jspa?projectId=12310464version=12320173 Releasing early, releasing often! Thoughts? I think there

Re: [codec] Release 1.7

2012-03-18 Thread Thomas Neidhart
On 03/18/2012 05:49 PM, Gary Gregory wrote: One additional thing: the fix for the QuotedPrintableCodec changed (slightly) the behavior of the encoding/decoding. As I have seen in some other classes, similar changes have been documented in the javadoc of the affected methods as well (e.g.

Re: [graph] exporter migration in branch

2012-03-18 Thread Thomas Neidhart
On 03/17/2012 01:55 AM, Simone Tripodi wrote: Hi Thomas, please see r1301848 - this is something prototypal and suggestions are much more than welcome! I'd encourage all [graph] people on experimenting stuff on a proper branch, everybody shall feel free to setup a branch and working on it!

Re: [codec] Release 1.7

2012-03-19 Thread Thomas Neidhart
On 03/19/2012 05:38 PM, Gary Gregory wrote: Ok, can you: (1) back out the QuotedPrintableCodec changes and (2) complete Codec-130? (1) I am working on it, svn seems to be dead over here in EU The reverted diff will be attached to the issue (2) I managed to commit it, would be nice if you

Re: [codec] Release 1.7

2012-03-19 Thread Thomas Neidhart
On 03/19/2012 08:50 PM, Gary Gregory wrote: On Mon, Mar 19, 2012 at 3:08 PM, Thomas Neidhart thomas.neidh...@gmail.comwrote: On 03/19/2012 05:38 PM, Gary Gregory wrote: Ok, can you: (1) back out the QuotedPrintableCodec changes and (2) complete Codec-130? (1) I am working on it, svn

Re: [codec] Release 1.7

2012-03-19 Thread Thomas Neidhart
On 03/19/2012 08:50 PM, Gary Gregory wrote: On (2): Looks good. I committed a couple of tweaks. Why should we have the almost same impl InflaterIS WRT the limit on the size of the input skip param? What if I want to skip in some giant multi-gig file (unlikely perhaps)? Oh, I misunderstood

Re: [codec] Release 1.7

2012-03-20 Thread Thomas Neidhart
On 03/19/2012 09:22 PM, Gary Gregory wrote: On Mon, Mar 19, 2012 at 4:01 PM, Thomas Neidhart thomas.neidh...@gmail.comwrote: On 03/19/2012 08:50 PM, Gary Gregory wrote: On Mon, Mar 19, 2012 at 3:08 PM, Thomas Neidhart thomas.neidh...@gmail.comwrote: On 03/19/2012 05:38 PM, Gary Gregory

Re: [VOTE] Release Commons IO 2.2-RC3

2012-03-21 Thread Thomas Neidhart
On 03/18/2012 08:03 PM, Gary Gregory wrote: Hello All: This is a VOTE to release Commons IO 2.2-RC3 The changes from RC2 are: - Remove macro from release notes - Add binary compatibility to release notes - Information in src/site/xdoc/upgradeto2_2.xml was missing The changes from RC1

Re: svn commit: r1304377 - /commons/proper/codec/trunk/src/test/java/org/apache/commons/codec/binary/HexTest.java

2012-03-23 Thread Thomas Neidhart
On 03/23/2012 03:39 PM, s...@apache.org wrote: Author: sebb Date: Fri Mar 23 14:39:56 2012 New Revision: 1304377 URL: http://svn.apache.org/viewvc?rev=1304377view=rev Log: Refix bug introduced in r1304137 (accidentally converted assertFalse to assertEquals) Modified:

Re: [math] Commons-Math 3.1?

2012-03-24 Thread Thomas Neidhart
On 03/18/2012 02:07 PM, Gilles Sadowski wrote: On Sun, Mar 18, 2012 at 10:35:51AM +0100, Sébastien Brisard wrote: Dear all, We should also close the Jira issues that have been solved as of 3.0. For newcomers, our policy on JIRA issues is that we mark them as resolved when the fix is

Re: [all] how to make Jira aware of releases

2012-03-24 Thread Thomas Neidhart
On 03/24/2012 05:29 PM, Luc Maisonobe wrote: Hi all, I have tried to tell Jira that version 3.0 of [math] has already been shipped, but I don't find how to do it. Some pages tell me I should connect to something called bamboo for release management, but I don't know what it is. Does

Re: [all] how to make Jira aware of releases

2012-03-24 Thread Thomas Neidhart
On 03/24/2012 07:33 PM, Luc Maisonobe wrote: Le 24/03/2012 17:35, Thomas Neidhart a écrit : On 03/24/2012 05:29 PM, Luc Maisonobe wrote: Hi all, I have tried to tell Jira that version 3.0 of [math] has already been shipped, but I don't find how to do it. Some pages tell me I should connect

Re: [lang] Longest common substring / Suffix Tree

2012-03-26 Thread Thomas Neidhart
Hi all, as a follow-up to the discussion, a first implementation of the lcs with SuffixTree is available at https://github.com/netomi/suffixtree see also the associated issue: https://issues.apache.org/jira/browse/LANG-680 Feedback would be very welcome, especially if we should go forward

Re: [math] Improvement: Interpreter for mathematical expressions

2012-03-27 Thread Thomas Neidhart
2012/3/27 Detlef Günther detlef.guent...@gmx.net Hello, it would be nice to have an interpreter for mathematical expressions so that functions may be defined at runtime. Example for f(x): ExpInter ei = new ExpInter(); ei.setFunction(ln(3*sin(2*x)+3)); // Plot the function: for

Re: [math] Improvement: Interpreter for mathematical expressions

2012-03-27 Thread Thomas Neidhart
On Tue, Mar 27, 2012 at 10:06 AM, Thomas Neidhart thomas.neidh...@gmail.com wrote: 2012/3/27 Detlef Günther detlef.guent...@gmx.net Hello, it would be nice to have an interpreter for mathematical expressions so that functions may be defined at runtime. [snip] ah something else I have

Re: [math] Improvement: Interpreter for mathematical expressions

2012-03-27 Thread Thomas Neidhart
On Tue, Mar 27, 2012 at 1:32 PM, Gilles Sadowski gil...@harfang.homelinux.org wrote: On Tue, Mar 27, 2012 at 12:53:25PM +0200, Detlef Günther wrote: Hi Thomas, congrace may be used by writing a wrapper Expression to UnivarteFunction: import

Re: [Math] changes HTML report

2012-03-28 Thread Thomas Neidhart
On Wed, Mar 28, 2012 at 12:27 PM, Gilles Sadowski gil...@harfang.homelinux.org wrote: Hello. [I think that this had already been reported earlier by Thomas.] The HTML page generated from the changes.xml file does not seem to be produced anymore (it used to be in target/site as a result

Re: [Math] On-demand cobertura report

2012-03-28 Thread Thomas Neidhart
On Wed, Mar 28, 2012 at 4:17 PM, Gilles Sadowski gil...@harfang.homelinux.org wrote: Hello. Please disable the default running of cobertura in mvn site. It is unbearably slow: e.g. on my machine, FastMathTest takes 1,544 seconds (that's a comma there; i.e. ~25 minutes!). If on-demand

Re: [Math] On-demand cobertura report

2012-03-28 Thread Thomas Neidhart
On 03/28/2012 05:46 PM, sebb wrote: On 28 March 2012 15:46, Gilles Sadowski gil...@harfang.homelinux.org wrote: Hello. Please disable the default running of cobertura in mvn site. It is unbearably slow: e.g. on my machine, FastMathTest takes 1,544 seconds (that's a comma there; i.e. ~25

Re: [codec] getting to ready to RC 1.7

2012-03-28 Thread Thomas Neidhart
On 03/28/2012 06:47 PM, sebb wrote: On 28 March 2012 17:14, Gary Gregory garydgreg...@gmail.com wrote: Hi All: If there is anything you're itching to for for codec 1.7, now is the time. Any comments on CODEC-96 ? Base64 encode() method is no longer thread-safe, breaking clients using it

Re: [codec] fixing CODEC-96 breaks BC

2012-04-02 Thread Thomas Neidhart
On Mon, Apr 2, 2012 at 4:09 PM, Gary Gregory garydgreg...@gmail.com wrote: WRT https://issues.apache.org/jira/browse/CODEC-96 (Moving discussion to ML from JIRA) OK, I see the Clirr errors now after applying CODEX-96-2.patch locally. It looks like normal users would not be affected. The

Re: svn commit: r1333397 - in /commons/proper/codec/trunk/src/main/java/org/apache/commons/codec: ./ binary/ digest/ language/ language/bm/ net/

2012-05-05 Thread Thomas Neidhart
On 05/03/2012 12:21 PM, s...@apache.org wrote: Author: sebb Date: Thu May 3 10:21:11 2012 New Revision: 197 URL: http://svn.apache.org/viewvc?rev=197view=rev Log: Add thread-safety Javadoc Modified:

Re: svn commit: r1334463 - in /commons/proper/math/trunk/src: main/java/org/apache/commons/math3/linear/HessenbergTransformer.java test/java/org/apache/commons/math3/linear/HessenbergTransformerTest.j

2012-05-05 Thread Thomas Neidhart
On 05/05/2012 08:02 PM, Luc Maisonobe wrote: Le 05/05/2012 19:53, t...@apache.org a écrit : Author: tn Date: Sat May 5 17:53:32 2012 New Revision: 1334463 URL: http://svn.apache.org/viewvc?rev=1334463view=rev Log: [MATH-235] add HessenbergTransformer to transform a general real matrix to

Re: [Math] Serializable (again)

2012-05-08 Thread Thomas Neidhart
On Tue, May 8, 2012 at 12:24 PM, Gilles Sadowski gil...@harfang.homelinux.org wrote: I am in favor of this second option: add Serializable were needed upon request. +1 +1 In this case, the request seems fair as the class is mainly a simple container for two values. But

Re: [Math] Serializable (again)

2012-05-08 Thread Thomas Neidhart
On 05/08/2012 01:44 PM, Gilles Sadowski wrote: Sorry to correct you: It was removed because it was not implemented properly. As a matter of principle, it is better to not support something rather to give a false sense of what can be done with the code. I do not want to start a heated

Re: [math] Exposing the Lanczos approximation in o.a.c.m3.special.Gamma?

2012-05-08 Thread Thomas Neidhart
On 05/08/2012 05:26 PM, Sébastien Brisard wrote: Hi, I've spent quite some time on MATH-753 [1], and I think I now have a satisfactory solution. The problem was to overcome the overflows which arise when computing the density of the Gamma distribution for large values of the argument and/or

Re: [math] Exposing the Lanczos approximation in o.a.c.m3.special.Gamma?

2012-05-09 Thread Thomas Neidhart
On Wed, May 9, 2012 at 7:40 AM, Sébastien Brisard sebastien.bris...@m4x.org wrote: Hi, the patch for the proposed modification has been attached to the MATH-753 ticket. Thanks for your comments! What I have seen in the patch, you remove duplicated code by using the already existing lanczos

[math] numerical problem sniffer

2012-05-14 Thread Thomas Neidhart
Hi all, as we all know, java does not provide any means of detecting overflows and/or underflows in numerical calculations off-the-shelf. While investigating some numerical stability problems and trying to improve the eigenvalue implementation, I was thinking about instrumenting certain

[math] numerical stability problems of continued fraction

2012-05-20 Thread Thomas Neidhart
Hi, I have worked on the numerical stability problems (see MATH-718, MATH-785) of our continued fraction implementation, which is used in several other classes (Beta, Gamma). As I was not really convinced with the scaling approach to overcome overflow and underflow situations which occur quite

Re: [math] numerical stability problems of continued fraction

2012-05-21 Thread Thomas Neidhart
On 05/21/2012 08:22 AM, Phil Steitz wrote: On 5/20/12 10:32 PM, Sébastien Brisard wrote: Hi Thomas, This seems to solve all the described problems, but the question remains if this can be included without problems into CM. The algorithm description in NR is not in source code but on an higher

[math][license] How to donate GPL-licensed code

2012-05-22 Thread Thomas Neidhart
Hi, I was in contact with Thomas Abeel, the creator of java-ml ( http://java-ml.sourceforge.net/) to discuss his interest to contribute certain parts of it to CM (mainly clustering algorithms). He is quite interested to donate most of the library to Apache Commons (except for some glue-code to

Re: [math][license] How to donate GPL-licensed code

2012-05-22 Thread Thomas Neidhart
On Tue, May 22, 2012 at 1:29 PM, Luc Maisonobe luc.maison...@free.frwrote: Yes, the process is to sign a software grant. See http://www.apache.org/licenses/#grants (private joke: I'm sure this will remind you something else ...). yes this looks somehow familiar ;-) Note that the grant

Re: [math] SparseRealVectorTest, SparseRealMatrixTest, SparseFieldMatrixTest, SparseFieldVectorTest

2012-05-28 Thread Thomas Neidhart
On 05/28/2012 11:23 AM, Luc Maisonobe wrote: Le 28/05/2012 09:42, Sébastien Brisard a écrit : Hi, is there a reason why these classes are called SparseXxxTest, instead of OpenMapXxxTest? Am I missing something? I don't remember the reason, it may either be that we renamed the library class

Re: svn commit: r1343163 - in /commons/proper/math/trunk/src: main/java/org/apache/commons/math3/linear/ test/java/org/apache/commons/math3/linear/

2012-05-28 Thread Thomas Neidhart
On 05/28/2012 02:28 PM, Sébastien Brisard wrote: Hi Gilles, 2012/5/28 Gilles Sadowski gil...@harfang.homelinux.org: Hello. Why do you call valueOf? I have to say I do not like implicit conversions, that's why I tend to always use Integer.valueOf and the likes. Why? This is going to

Re: svn commit: r1348024 - in /commons/proper/math/trunk/src: main/java/org/apache/commons/math3/stat/inference/MannWhitneyUTest.java test/java/org/apache/commons/math3/stat/inference/MannWhitneyUTest

2012-06-11 Thread Thomas Neidhart
On 06/08/2012 01:04 PM, m...@apache.org wrote: Author: mikl Date: Fri Jun 8 11:04:11 2012 New Revision: 1348024 URL: http://svn.apache.org/viewvc?rev=1348024view=rev Log: MATH-790: Patch applied to fix the overflow issue. Modified:

Re: svn commit: r1348024 - in /commons/proper/math/trunk/src: main/java/org/apache/commons/math3/stat/inference/MannWhitneyUTest.java test/java/org/apache/commons/math3/stat/inference/MannWhitneyUTest

2012-06-12 Thread Thomas Neidhart
On Tue, Jun 12, 2012 at 8:13 AM, Mikkel Meyer Andersen m...@mikl.dk wrote: 2012/6/12 Thomas Neidhart thomas.neidh...@gmail.com: On 06/08/2012 01:04 PM, m...@apache.org wrote: Author: mikl Date: Fri Jun 8 11:04:11 2012 New Revision: 1348024 URL: http://svn.apache.org/viewvc?rev

Re: svn commit: r1351852 - in /commons/proper/collections/trunk/src: main/java/org/apache/commons/collections/buffer/ test/java/org/apache/commons/collections/buffer/

2012-06-20 Thread Thomas Neidhart
On 06/20/2012 12:19 AM, sebb wrote: On 19 June 2012 22:05, t...@apache.org wrote: Author: tn Date: Tue Jun 19 21:05:48 2012 New Revision: 1351852 URL: http://svn.apache.org/viewvc?rev=1351852view=rev Log: [COLLECTIONS-399] Added get(index) method to BoundedFifoBuffer. Modified:

[collections] Cleanup of trunk

2012-06-24 Thread Thomas Neidhart
Hi, I recently started to work more on collections and cleaning up the trunk to make it a candidate for a release and would like to ask a few questions: - there is still lots of javadoc missing, moving the source code level to Java 1.6 would allow the use of @Override in more places (instead

Re: [collections] Cleanup of trunk

2012-06-25 Thread Thomas Neidhart
Hi, thanks for all the feedback. I will then postpone all Java 6 related changes but start with the other ones. I hope my activity will spark some more interest by other people as it would be a pity to never release a generic version of collections if it is there and ready to be used. Thomas

Re: [collections] Cleanup of trunk

2012-06-25 Thread Thomas Neidhart
On 06/25/2012 08:41 PM, Liviu Tudor wrote: Hi Thomas, A bit late with my reply, sorry -- but if you could do with an extra pair of hands on this I'd be happy to help! Hi, apart from the normal cleanup, adding unit tests and javadoc, I would like to see the following features added: - add

Re: [collections] Cleanup of trunk

2012-07-03 Thread Thomas Neidhart
On 07/03/2012 11:04 PM, Jörg Schaible wrote: Hi Thomas, Thomas Neidhart wrote: Hi, I recently started to work more on collections and cleaning up the trunk to make it a candidate for a release and would like to ask a few questions: - there is still lots of javadoc missing, moving

[math] Eigen decomposition of real asymmetric matrices

2012-07-18 Thread Thomas Neidhart
Hi, I finalized now this feature request (MATH-235) by adding more random data test which success for an epsilon of 1e-12, which imho is pretty good for now. For the problem with the internal DecompositionSolver, I now throw an MathUnsupportedOperationException when trying to get a solver for a

Re: [math] Eigen decomposition of real asymmetric matrices

2012-07-22 Thread Thomas Neidhart
On 07/18/2012 10:55 PM, Thomas Neidhart wrote: Hi, I finalized now this feature request (MATH-235) by adding more random data test which success for an epsilon of 1e-12, which imho is pretty good for now. For the problem with the internal DecompositionSolver, I now throw

Re: [Math] Little thought about multi-threading

2012-07-22 Thread Thomas Neidhart
On 07/22/2012 11:25 PM, Gilles Sadowski wrote: [...] Threaded execution, on the other hand, can be very, very helpful for a number of math algorithms and thread management inside commons math is a very reasonable option in those cases. This would provide a performance boost with very

Re: [Math] Random tests sometimes fail (r1363105)

2012-07-23 Thread Thomas Neidhart
On Mon, Jul 23, 2012 at 12:44 AM, Gilles Sadowski gil...@harfang.homelinux.org wrote: Hi Thomas. Hi Gilles, I've encountered a failure of one the tests which you introduced in revision 1363105. Here is an excerpt of the error: ---

[collections] hudson/jira integration

2012-07-26 Thread Thomas Neidhart
Hi, is there a way to disable the hudson integration with jira? Is is just annoying and confusing if build failure comments pop up in completely unrelated issues. Thanks, Thomas - To unsubscribe, e-mail:

Re: [collections] hudson/jira integration

2012-07-27 Thread Thomas Neidhart
On 07/26/2012 11:41 PM, sebb wrote: On 26 July 2012 21:27, Thomas Neidhart thomas.neidh...@gmail.com wrote: Hi, is there a way to disable the hudson integration with jira? Try asking on the bui...@apache.org list. Thanks, but no feedback yet. Thomas

Re: [collections] hudson/jira integration

2012-07-27 Thread Thomas Neidhart
On 07/27/2012 08:33 PM, sebb wrote: On 27 July 2012 19:17, Thomas Neidhart thomas.neidh...@gmail.com wrote: On 07/26/2012 11:41 PM, sebb wrote: On 26 July 2012 21:27, Thomas Neidhart thomas.neidh...@gmail.com wrote: Hi, is there a way to disable the hudson integration with jira? Try asking

Re: Trie data structure

2012-08-01 Thread Thomas Neidhart
Hi Tommaso, you may want to take a look at commons-collections, which now has a Trie implementation (see https://issues.apache.org/jira/browse/COLLECTIONS-225). The code can be found here http://svn.apache.org/viewvc/commons/proper/collections/trunk/ Any feedback, help is welcome! Thomas On

Re: svn commit: r1369292 - /commons/proper/collections/trunk/src/test/java/org/apache/commons/collections/TestCollectionUtils.java

2012-08-04 Thread Thomas Neidhart
On 08/04/2012 11:26 AM, sebb wrote: On 4 August 2012 10:06, t...@apache.org wrote: Author: tn Date: Sat Aug 4 09:06:21 2012 New Revision: 1369292 URL: http://svn.apache.org/viewvc?rev=1369292view=rev Log: Add javadoc comment to prevent removal of a generics fix. Modified:

Re: [continuum] BUILD FAILURE: Apache Commons - Commons Math - Group (shared) Maven 2 Build Definition (Java 1.5)

2012-08-04 Thread Thomas Neidhart
On 08/04/2012 02:13 PM, Gilles Sadowski wrote: On Fri, Aug 03, 2012 at 08:47:56PM +, Continuum@vmbuild wrote: Online report : http://vmbuild.apache.org/continuum/buildResult.action?buildId=24474projectId=97 Build statistics: State: Failed Previous State: Failed Started at: Fri 3

Re: [Math] Towards release 3.1

2012-08-04 Thread Thomas Neidhart
On 08/03/2012 10:22 PM, Gilles Sadowski wrote: Hello. More than 60 issues have been resolved since the release of Commons Math 3.0. The number of resolved issues in JIRA is misleading as it includes also issues resolved as Won't Fix or Duplicate. Also not all issues have been closed after

Re: Fwd: svn commit: r1369931 - in /commons/proper/collections/trunk/src/main/java/org/apache/commons/collections: keyvalue/ list/

2012-08-06 Thread Thomas Neidhart
On 08/06/2012 10:00 PM, Jörg Schaible wrote: === % == Betreff: svn commit: r1369931 - in /commons/proper/collections/trunk/src/main/java/org/apache/commons/collections: keyvalue/ list/ Absender: tn-1odqgaof3lkdnm+yrof...@public.gmane.org Datum:

Re: Fwd: svn commit: r1369931 - in /commons/proper/collections/trunk/src/main/java/org/apache/commons/collections: keyvalue/ list/

2012-08-07 Thread Thomas Neidhart
On Tue, Aug 7, 2012 at 10:24 AM, Jörg Schaible joerg.schai...@scalaris.comwrote: Hi Thomas, Thomas Neidhart wrote: On 08/06/2012 10:00 PM, Jörg Schaible wrote: === % == Betreff: svn commit: r1369931 - in /commons/proper/collections/trunk

Re: [math] problems with tests due to matrix formatting

2012-08-14 Thread Thomas Neidhart
On 08/14/2012 05:25 PM, luc wrote: Hi, Since a few weeks, I have lots of tests failures due to matrix formats. I'm not sure exactly when this started, but I think this may be related to MATH-831 and the fix introduced as of r1364775 in late July. This changed the behaviour of toString in

Re: [continuum] BUILD FAILURE: Apache Commons - Commons Math -

2012-08-16 Thread Thomas Neidhart
On 08/15/2012 05:41 AM, Continuum@vmbuild wrote: Group (shared) Maven 2 Build Definition (Java 1.5) MIME-Version: 1.0 Content-Type: text/plain; charset=us-ascii Content-Transfer-Encoding: 7bit X-Continuum-Build-Host: vmbuild X-Continuum-Project-Id: 97 X-Continuum-Project-Name:

Re: [Codec] Next Commons-Codec release?

2012-08-17 Thread Thomas Neidhart
On 08/16/2012 01:37 PM, Gary Gregory wrote: (edited message subject to add [Codec] prefix) Yes, there is a certain amount of rain dancing, keeping of fingers crossed, and cussing involved when cutting releasing, and it's fallen off my radar to due other priorities. Is the ML content by

Re: [Codec] Next Commons-Codec release?

2012-08-20 Thread Thomas Neidhart
On 08/17/2012 09:15 PM, Gary Gregory wrote: On Fri, Aug 17, 2012 at 2:49 PM, Thomas Neidhart thomas.neidh...@gmail.comwrote: On 08/16/2012 01:37 PM, Gary Gregory wrote: (edited message subject to add [Codec] prefix) Yes, there is a certain amount of rain dancing, keeping of fingers

Re: [Codec] Next Commons-Codec release?

2012-08-20 Thread Thomas Neidhart
On 08/20/2012 10:46 PM, Gary Gregory wrote: TN (or anyone): I get a lot of Checstyle errors Missing a header - not enough lines in file. Do you get those too? Yes, indeed, I get the same errors, but I had the header check disabled locally (I guess for the very same reason). Thomas

Re: [Codec] Next Commons-Codec release?

2012-08-21 Thread Thomas Neidhart
On 08/21/2012 03:33 PM, Gary Gregory wrote: On Mon, Aug 20, 2012 at 5:36 PM, Thomas Neidhart thomas.neidh...@gmail.comwrote: On 08/20/2012 10:46 PM, Gary Gregory wrote: TN (or anyone): I get a lot of Checstyle errors Missing a header - not enough lines in file. Do you get those too

Re: [Codec] Next Commons-Codec release?

2012-08-22 Thread Thomas Neidhart
On 08/22/2012 02:49 AM, Gary Gregory wrote: On Tue, Aug 21, 2012 at 4:50 PM, Thomas Neidhart thomas.neidh...@gmail.comwrote: On 08/21/2012 03:33 PM, Gary Gregory wrote: On Mon, Aug 20, 2012 at 5:36 PM, Thomas Neidhart thomas.neidh...@gmail.comwrote: On 08/20/2012 10:46 PM, Gary Gregory

Re: [math] Formatting

2012-08-23 Thread Thomas Neidhart
On Thu, Aug 23, 2012 at 1:16 PM, Sébastien Brisard sebastien.bris...@m4x.org wrote: Hi, Probably easiest to use the Wiki for this, at least initially. I'm not very fond of the Wiki: maybe I could just start a JIRA ticket, that would allow recording our discussions. If there are

Re: [Codec] Next Commons-Codec release?

2012-08-23 Thread Thomas Neidhart
On 08/22/2012 01:23 PM, Gary Gregory wrote: I did the SVN update from E and the build from a Win7 command line. Does it still not work for you? I do not get warning anymore (apart from the generics related in StringEncoderComparator), both via the checkstyle eclipse plugin and by doing mvn

Re: [math] About MATH-849 and the NSWC library

2012-08-23 Thread Thomas Neidhart
On 08/22/2012 06:43 AM, Sébastien Brisard wrote: Dear all, please review the code I've attached to MATH-849. The improvement in accuracy is great. I also implemented, besides logGamma(x), a new function -- namely Gamma(x). I would like to know if you feel the references to the NSWC library is

Re: [codec] Vacuous bit mask operation on integer value in UnixCrypt

2012-08-27 Thread Thomas Neidhart
On 08/27/2012 03:36 PM, Gary Gregory wrote: Hi All: FindBugs says the following a couple of times for UnixCrypt: Vacuous bit mask operation on integer value (INT_VACUOUS_BIT_OPERATION) This is an integer bit operation (and, or, or exclusive or) that doesn't do any useful work (e.g., v

Re: [codec] Vacuous bit mask operation on integer value in UnixCrypt

2012-08-28 Thread Thomas Neidhart
On 08/28/2012 03:33 AM, Christian Hammers wrote: Am Tue, 28 Aug 2012 00:09:41 +0200 schrieb Christian Hammers c...@lathspell.de: Hello Am Mon, 27 Aug 2012 16:39:23 -0400 schrieb Gary Gregory garydgreg...@gmail.com: On Mon, Aug 27, 2012 at 2:53 PM, Thomas Neidhart thomas.neidh

Re: [codec] MD5 impls

2012-08-30 Thread Thomas Neidhart
On 08/30/2012 06:31 PM, Gary Gregory wrote: On Thu, Aug 30, 2012 at 11:53 AM, sebb seb...@gmail.com wrote: On 30 August 2012 16:51, Gary Gregory garydgreg...@gmail.com wrote: On Thu, Aug 30, 2012 at 11:41 AM, sebb seb...@gmail.com wrote: On 30 August 2012 16:01, Gary Gregory

Re: [math] Re: Single root for Exceptions

2012-08-30 Thread Thomas Neidhart
On 08/30/2012 12:41 PM, Luc Maisonobe wrote: Le 30/08/2012 05:08, Sébastien Brisard a écrit : Hello, Hi, sorry, I did not participate much in the discussion. 2012/8/30 Gilles Sadowski gil...@harfang.homelinux.org: Hello. To summarize: (1) Does anyone disagree with having all CM

[codec] javadoc style

2012-08-30 Thread Thomas Neidhart
Hi, there are quite some differences on the javadoc style in the source files, e.g. the number of spaces before a @param description, whether there is an empty line between @param, @return and @throws. Any thoughts on that? I am willing to clean up but do not want to impose any personal

Re: [math] Re: Single root for Exceptions

2012-08-31 Thread Thomas Neidhart
On 08/31/2012 11:17 AM, Luc Maisonobe wrote: Le 31/08/2012 03:22, Sébastien Brisard a écrit : Hello, [...] Thus, shall I open a JIRA ticket with the tasks of completing the throws clauses of all CM methods? Does someone absolutely needs this task tobe completed before releasing 3.1?

Re: [codec] Getting ready for an RC

2012-09-02 Thread Thomas Neidhart
On 09/02/2012 10:17 PM, Gary Gregory wrote: On Sep 2, 2012, at 15:51, sebb seb...@gmail.com wrote: On 2 September 2012 19:45, Gary Gregory garydgreg...@gmail.com wrote: Hi All: There has been a recent mini-flury of changes in codec as a release candidate is approaching. Thank you to all

Re: svn commit: r1380305 - in /commons/proper/codec/trunk/src/main/java/org/apache/commons/codec: Charsets.java binary/Hex.java net/BCodec.java net/QCodec.java net/QuotedPrintableCodec.java

2012-09-03 Thread Thomas Neidhart
On 09/03/2012 08:48 PM, sebb wrote: On 3 September 2012 19:37, t...@apache.org wrote: Author: tn Date: Mon Sep 3 18:37:21 2012 New Revision: 1380305 URL: http://svn.apache.org/viewvc?rev=1380305view=rev Log: Fixed findbugs warning wrt unused imports resulting from javadoc types.

Re: [math] workaround to get site reports to run WAS: Re: [math] spinning BOBYQAOptimizerTest

2012-09-08 Thread Thomas Neidhart
On 09/08/2012 07:05 PM, Phil Steitz wrote: Per the thread below, mvn site now takes an very, very long time to run on many (most?) platforms, so as a workaround until we figure out how to fix the tests or plugins, here is a quick way to get the basic site generated locally with static analysis

Re: [math] workaround to get site reports to run WAS: Re: [math] spinning BOBYQAOptimizerTest

2012-09-08 Thread Thomas Neidhart
On 09/08/2012 10:21 PM, Thomas Neidhart wrote: On 09/08/2012 07:05 PM, Phil Steitz wrote: Per the thread below, mvn site now takes an very, very long time to run on many (most?) platforms, so as a workaround until we figure out how to fix the tests or plugins, here is a quick way to get

Re: svn commit: r1382770 - /commons/proper/codec/trunk/src/changes/changes.xml

2012-09-10 Thread Thomas Neidhart
On Mon, Sep 10, 2012 at 1:43 PM, ggreg...@apache.org wrote: Author: ggregory Date: Mon Sep 10 11:43:48 2012 New Revision: 1382770 URL: http://svn.apache.org/viewvc?rev=1382770view=rev Log: Preparing for release 1.7 RC1. Modified: commons/proper/codec/trunk/src/changes/changes.xml

Re: [Math] Towards release 3.1

2012-09-12 Thread Thomas Neidhart
On Wed, Sep 12, 2012 at 2:04 PM, Gilles Sadowski gil...@harfang.homelinux.org wrote: Hello. This thread was left alone for some time, although the main issue was not settled: I requested the release of a new version of CM. I quote my remarks from an earlier message in this thread: [...]

Re: [VOTE] Release Commons Codec 1.7-RC2

2012-09-12 Thread Thomas Neidhart
On 09/11/2012 02:26 PM, Gary Gregory wrote: Hello All: This is a VOTE to release Commons Codec 1.7-RC2. +1 Thomas - To unsubscribe, e-mail: dev-unsubscr...@commons.apache.org For additional commands, e-mail:

Re: svn commit: r1384363 - in /commons/proper/math/trunk/src: changes/ main/java/org/apache/commons/math3/linear/ test/java/org/apache/commons/math3/linear/ test/java/org/apache/commons/math3/random/

2012-09-13 Thread Thomas Neidhart
On 09/13/2012 05:13 PM, l...@apache.org wrote: Author: luc Date: Thu Sep 13 15:13:03 2012 New Revision: 1384363 URL: http://svn.apache.org/viewvc?rev=1384363view=rev Log: Fixed an error in rectangular Cholesky decomposition. JIRA: MATH-789 Hi Luc, thanks for looking into this. I

Re: [RESULT][VOTE] Release Commons Codec 1.7-RC2

2012-09-14 Thread Thomas Neidhart
On 09/14/2012 04:34 PM, Gary Gregory wrote: The VOTE to release Commons Codec 1.7-RC2 passes with the following votes: Oliver Heger (PMC) Simone Tripodi (PMC) Thomas Neidhart (PMC) I am not on the PMC. See http://people.apache.org/committers-by-project.html#commons-pmc Thomas

[math] apachecon

2012-09-18 Thread Thomas Neidhart
Hi, does anybody plan to go to ApacheCon 2012? Would be nice to meet each other there. Thomas - To unsubscribe, e-mail: dev-unsubscr...@commons.apache.org For additional commands, e-mail: dev-h...@commons.apache.org

[math] geometry algorithms

2012-10-09 Thread Thomas Neidhart
Hi, I started to work on the proposed new features, namely convex hull and voronoi diagrams but am a bit stuck with the API design. The current type structure in the geometry package introduced a so called Space with different implementation for 1D, 2D and 3D. To represent a Vector in the

Re: [math] geometry algorithms

2012-10-10 Thread Thomas Neidhart
On 10/10/2012 02:09 PM, Gilles Sadowski wrote: Hello. Hi Luc, Gilles, I started to work on the proposed new features, namely convex hull and voronoi diagrams but am a bit stuck with the API design. The current type structure in the geometry package introduced a so called Space with

Re: [math] geometry algorithms

2012-10-15 Thread Thomas Neidhart
On 10/10/2012 12:04 AM, Gilles Sadowski wrote: Hi. [...] public interface ConvexHullS extends Space { VectorS[] generate(VectorS[] points); } I think that you should use List instead of arrays (even Iterable whenever possible); it will be plainly more flexible. Just a little

Re: [math] correlation analysis with NaNs

2012-11-08 Thread Thomas Neidhart
and handled in a more comprehensive and systematic way. I think this additional option makes sense, but I forward this discussion to the dev mailing list where it is better suited. Thomas -Original Message- From: Thomas Neidhart [mailto:thomas.neidh...@gmail.com] Sent: Wednesday

Re: [math] correlation analysis with NaNs

2012-11-08 Thread Thomas Neidhart
On 11/08/2012 02:01 PM, Sébastien Brisard wrote: Hi, 2012/11/8 Gilles Sadowski gil...@harfang.homelinux.org: On Thu, Nov 08, 2012 at 09:39:00AM +0100, Thomas Neidhart wrote: Hi Patrick, On 11/07/2012 04:37 PM, Patrick Meyer wrote: I agree that it would be nice to have a constructor

Re: [math] correlation analysis with NaNs

2012-11-09 Thread Thomas Neidhart
On Thu, Nov 8, 2012 at 7:21 PM, Phil Steitz phil.ste...@gmail.com wrote: On 11/8/12 9:44 AM, Phil Steitz wrote: On 11/8/12 8:23 AM, Gilles Sadowski wrote: On Thu, Nov 08, 2012 at 05:00:52PM +0100, Thomas Neidhart wrote: On 11/08/2012 02:01 PM, Sébastien Brisard wrote: Hi, 2012/11/8

Re: [all] moving to svnpubsub or CMS?

2012-11-14 Thread Thomas Neidhart
On 11/14/2012 08:40 AM, Luc Maisonobe wrote: Hi all, Once again, I ping everyone in our community to find a volunteer to move our site to one of the new mechanisms provided by infra: svnpubsub or the Apache CMS. We really *need* to do this. If we don't, our site will be completely frozen

Re: [Math] FixedElapsedTime in genetic algorithm (Was: svn commit: r1409352 - ...)

2012-11-15 Thread Thomas Neidhart
On 11/15/2012 02:23 AM, Gilles Sadowski wrote: On Wed, Nov 14, 2012 at 04:38:47PM -0800, Phil Steitz wrote: On 11/14/12 4:05 PM, Gilles Sadowski wrote: Hi. On Wed, Nov 14, 2012 at 08:09:52PM -, t...@apache.org wrote: Author: tn Date: Wed Nov 14 20:09:51 2012 New Revision: 1409352

Re: svn commit: r1409352 - /commons/proper/math/trunk/src/test/java/org/apache/commons/math3/genetics/FixedElapsedTimeTest.java

2012-11-15 Thread Thomas Neidhart
On 11/15/2012 01:05 AM, Gilles Sadowski wrote: Hi. On Wed, Nov 14, 2012 at 08:09:52PM -, t...@apache.org wrote: Author: tn Date: Wed Nov 14 20:09:51 2012 New Revision: 1409352 URL: http://svn.apache.org/viewvc?rev=1409352view=rev Log: Reduce sleep time in unit test to prevent

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