Michelle and Michael,
Try the new pymol-py-1.0r2-1002 packaging in fink 10.4/10.5
unstable. I've hacked around the problem of the python from
the python2.5 package incorrectly generating the Makefile in
contrib/modules. The package should build fine now although
we still need to figure exactly
Unfortunately, I still get the same error--see below. If I can provide
more info, let me know.
Michelle Gill
gcc -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -I/sw/include/
python2.5 -I/sw/include/python2.5 -I/sw/include -c ././
ExtensionClass.c -o ./ExtensionClass.o
Michelle,
You are still building pymol-py25-1.0r2-1001 and not
the newer pymol-py25-1.0r2-1002. Make sure you have
fink unstable enabled in /sw/etc/fink.conf and do
a 'fink selfupdate-cvs' to pull down the latest
info and patch for pymol-py before you try to rebuild
pymol-py25 again.
Oops. I have my fink set to update with launchd and didn't catch the
small version number difference when I checked before installing. I
thought it updated already today.
Version 1002 builds and runs perfectly! Yeah!
Cheers,
Michelle Gill
On May 9, 2008, at 6:22 PM, Jack Howarth wrote:
Hi Michael,
For some reason, I'm not getting the emails from this listserve--
sorry. I'll have to look into that.
For the Fink compilation, I just noticed a typo in my suggestion.
PYTHON_EXE should be set to /sw/bin/python2.5 not /sw/lib/
python2.5. I bet you can get the fink package to
Michael,
I guess you figured out my typo. I didn't see the additional replies
on the thread.
There is one more thing you can try on the fink compilation tree.
After correctly edition Rules.delsci, run the following command:
make clean -f Makefile.delsci
Then do the usual make command:
make
Hello Finkers,
I am having trouble compiling pymol-py25 on a fresh install of OS X
Leopard. I have also tried to compile the most recent version of pymol
(1.0r3) from SVN by hand against the required dependencies (from fink)
and get the same error.
Before the reinstall, I was running the
On Apr 30, 2008, at 8:21 AM, Alexander Hansen wrote:
Gill Michelle wrote:
Hello Finkers,
I am having trouble compiling pymol-py25 on a fresh install of OS X
Leopard. I have also tried to compile the most recent version of
pymol (1.0r3) from SVN by hand against the required dependencies
Gill Michelle wrote:
Hello Finkers,
I am having trouble compiling pymol-py25 on a fresh install of OS X
Leopard. I have also tried to compile the most recent version of pymol
(1.0r3) from SVN by hand against the required dependencies (from fink)
and get the same error.
Before the
On Apr 30, 2008, at 9:09 AM, Gill Michelle wrote:
On Apr 30, 2008, at 8:21 AM, Alexander Hansen wrote:
Gill Michelle wrote:
Hello Finkers,
I am having trouble compiling pymol-py25 on a fresh install of OS
X Leopard. I have also tried to compile the most recent version of
pymol (1.0r3)
Thank you for the suggestion. I tried editing the Rules.delsci, with
no joy. i still get the same error:
./ExtensionClass.o -o ./ExtensionClass.so
make[2]: execvp: ./ExtensionClass.o: Permission denied
make[2]: *** [ExtensionClass.so] Error 127
make[1]: *** [make-modules] Error 2
make: ***
Michael Giffin wrote:
Thank you for the suggestion. I tried editing the Rules.delsci, with
no joy. i still get the same error:
You did that, and then followed Michelle's prescription exactly? You
didn't try to do it in Fink, right?
./ExtensionClass.o -o ./ExtensionClass.so
make[2]:
Thanks for the reply, Alexander.
On Wed, Apr 30, 2008 at 12:04 PM, Alexander Hansen
[EMAIL PROTECTED] wrote:
Michael Giffin wrote:
Thank you for the suggestion. I tried editing the Rules.delsci, with
no joy. i still get the same error:
You did that, and then followed Michelle's
Michael Giffin wrote:
Thanks for the reply, Alexander.
On Wed, Apr 30, 2008 at 12:04 PM, Alexander Hansen
[EMAIL PROTECTED] wrote:
Michael Giffin wrote:
Thank you for the suggestion. I tried editing the Rules.delsci, with
no joy. i still get the same error:
You
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