Re: [Freesurfer] Fwd: Problem with Freesurfer 5.3

2015-05-21 Thread Cecilio C Baro Perez
from the aseg as the definitions are a bit different as are the algorithms). cheers Bruce On Thu, 14 May 2015, Cecilio C Baro Perez wrote: Dear professor Bruce! Sorry for bothering you again! I'm about to extract the hippocampus volume of a group of FS processed patients. Though, I have

Re: [Freesurfer] Fwd: Problem with Freesurfer 5.3

2015-05-21 Thread Cecilio C Baro Perez
- From: Cecilio C Baro Perez cecilio.c.b...@gmail.com To: Freesurfer support list freesurfer@nmr.mgh.harvard.edu Sent: Thursday, May 21, 2015 4:35:31 AM Subject: Re: [Freesurfer] Fwd: Problem with Freesurfer 5.3 Hi professor Bruce! I got finally the segmentation of the hippocampus

Re: [Freesurfer] Fwd: Problem with Freesurfer 5.3

2015-05-21 Thread Cecilio C Baro Perez
Postdoctoral researcher BCBL www.jeiglesias.com www.bcbl.eu Legal disclaimer/Aviso legal/Lege-oharra: www.bcbl.eu/legal-disclaimer - Original Message - From: Cecilio C Baro Perez cecilio.c.b...@gmail.com To: Freesurfer support list freesurfer@nmr.mgh.harvard.edu Sent: Thursday, May 21

Re: [Freesurfer] Fwd: Problem with Freesurfer 5.3

2015-04-30 Thread Cecilio C Baro Perez
a problem, see http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting Could that be an bug in the program? Once again! Thank you for your help! Best regards; Cecilio. 2015-04-29 1:09 GMT+08:00 Cecilio C Baro Perez cecilio.c.b...@gmail.com: Thank you so much for your quick and helpful response! Best

Re: [Freesurfer] Fwd: Problem with Freesurfer 5.3

2015-04-30 Thread Cecilio C Baro Perez
are using. On Thu, 30 Apr 2015, Cecilio C Baro Perez wrote: Dear professor Bruce! Sorry for bothering again, well I did exatly as you told before in order to process different subject at the same time: recon-all -s Pat1 -i

Re: [Freesurfer] Fwd: Problem with Freesurfer 5.3

2015-04-30 Thread Cecilio C Baro Perez
to dicoms for patient 1) -all recon-all -s Pat2 -i path to dicoms for patient 2) -all . . . cheers Bruce p.s. for the tcsh bug you should just get your sysadmin to update the version of tcsh you are using. On Thu, 30 Apr 2015, Cecilio C Baro Perez wrote: Dear professor Bruce! Sorry

Re: [Freesurfer] Fwd: Problem with Freesurfer 5.3

2015-04-26 Thread Cecilio C Baro Perez
parameters and also visualize it. cheers Bruce On Sat, 25 Apr 2015, Cecilio C Baro Perez wrote: Hi Bruce! Thank you for your quick replay! I appreciate that! Well my data is T1 dicom images. And For every subject I have 224 scans. Though as I'm using freesurfer I'm trying by only using 2

[Freesurfer] Fwd: Problem with Freesurfer 5.3

2015-04-24 Thread Cecilio C Baro Perez
Hi! My name is Cecilio! I'm using the freesurfer 5.3 and I'm having some issues that I hope you could help me with. When I perform: recon-all -s patienttesta -all I get this error: recon-all -s patienttesta exited with ERRORS ERROR: talairach_afd: Talairach Transform: