Re: [Freesurfer] DTI - tracula - satisfactory cntrl pnts

2013-12-05 Thread Jon Wieser
wie...@uwm.edu Cc: Skyler Gabriel Shollenbarger sholl...@uwm.edu, freesurfer freesurfer@nmr.mgh.harvard.edu Sent: Wednesday, December 4, 2013 5:15:47 PM Subject: Re: [Freesurfer] DTI - tracula - satisfactory cntrl pnts Yes, you are correct. I sometimes forget these log files keep appending

Re: [Freesurfer] DTI - tracula - satisfactory cntrl pnts

2013-12-04 Thread Anastasia Yendiki
appreciated. Skyler - Original Message - From: Anastasia Yendiki ayend...@nmr.mgh.harvard.edu To: Skyler Gabriel Shollenbarger sholl...@uwm.edu Cc: Freesurfer@nmr.mgh.harvard.edu Sent: Monday, December 2, 2013 4:27:37 PM Subject: Re: [Freesurfer] DTI - tracula - satisfactory cntrl pnts Hi Skyler

Re: [Freesurfer] DTI - tracula - satisfactory cntrl pnts

2013-12-04 Thread Z K
To: Skyler Gabriel Shollenbarger sholl...@uwm.edu Cc: freesurfer@nmr.mgh.harvard.edu Sent: Tuesday, December 3, 2013 1:19:55 AM Subject: Re: [Freesurfer] DTI - tracula - satisfactory cntrl pnts Hi Skyler - I would *highly* recommend using the version of tracula in 5.3, as there have been

Re: [Freesurfer] DTI - tracula - satisfactory cntrl pnts

2013-12-04 Thread Z K
: Wednesday, December 4, 2013 9:46:37 AM Subject: Re: [Freesurfer] DTI - tracula - satisfactory cntrl pnts It looks like your running 32bit freesurfer on a 64bit machine with snow leopard installed on it. In this case You will have to install the 64bit version of freesurfer instead of the 32bit

Re: [Freesurfer] DTI - tracula - satisfactory cntrl pnts

2013-12-04 Thread Jon Wieser
...@nmr.mgh.harvard.edu To: Skyler Gabriel Shollenbarger sholl...@uwm.edu Cc: freesurfer@nmr.mgh.harvard.edu Sent: Tuesday, December 3, 2013 1:19:55 AM Subject: Re: [Freesurfer] DTI - tracula - satisfactory cntrl pnts Hi Skyler - I would *highly* recommend using the version of tracula in 5.3

Re: [Freesurfer] DTI - tracula - satisfactory cntrl pnts

2013-12-04 Thread Z K
@nmr.mgh.harvard.edu, Jon Wieser wie...@uwm.edu Sent: Wednesday, December 4, 2013 2:29:43 PM Subject: Re: [Freesurfer] DTI - tracula - satisfactory cntrl pnts According to the log file you sent, you are running freesurfer 5.1, leopard version. And now that I am looking at your previous email, it seems you were

Re: [Freesurfer] DTI - tracula - satisfactory cntrl pnts

2013-12-03 Thread Jon Wieser
Gabriel Shollenbarger sholl...@uwm.edu Cc: freesurfer@nmr.mgh.harvard.edu Sent: Tuesday, December 3, 2013 1:19:55 AM Subject: Re: [Freesurfer] DTI - tracula - satisfactory cntrl pnts Hi Skyler - I would *highly* recommend using the version of tracula in 5.3, as there have been improvements in both

[Freesurfer] DTI - tracula - satisfactory cntrl pnts

2013-12-02 Thread Skyler Gabriel Shollenbarger
Hi all, I've been running DTI using tracula (fs version 5) for over 1 week on 2 subjects. It appears that it is having difficulty finding satisfactory control point fit and has attempted over 1600 tries. Any help is greatly appreciated. See error below: INFO: Distances between consecutive

Re: [Freesurfer] DTI - tracula - satisfactory cntrl pnts

2013-12-02 Thread Anastasia Yendiki
Hi Skyler - Are you using freesurfer 5.1 or 5.3? Most likely this issue is due to poor registration, either from the individual DWI to the individual T1, or from the individual T1 to the template space. Or it could be that there is a problem with the aparc+aseg. a.y On Mon, 2 Dec 2013,

Re: [Freesurfer] DTI - tracula - satisfactory cntrl pnts

2013-12-02 Thread Anastasia Yendiki
Message - From: Anastasia Yendiki ayend...@nmr.mgh.harvard.edu To: Skyler Gabriel Shollenbarger sholl...@uwm.edu Cc: Freesurfer@nmr.mgh.harvard.edu Sent: Monday, December 2, 2013 4:27:37 PM Subject: Re: [Freesurfer] DTI - tracula - satisfactory cntrl pnts Hi Skyler - Are you using freesurfer