Re: previous email

2002-10-16 Thread Hauke Heekeren
Hi Bob, you'll find it here: http://www.mail-archive.com/freesurfer@surfer.nmr.mgh.harvard.edu/ h. On Wed, 2002-10-16 at 13:53, Bob Thoma wrote: Hello, I can't seem to remember the web location that contains an index of previous emails. I would appreciate it if someone

Re: skull stripping

2002-10-16 Thread Evelina Busa
On Wed, 16 Oct 2002, Bob Thoma wrote: All, I've been having some difficulty with skull stripping, it doesn't appear to be removing enough. Hello again, Just a quick correction -- you'd want to increase the preflooding height from its default of 25 if the skull strip isn't removing

Re: Installing MNI registration utilities

2002-10-16 Thread Timothy Souza
Hi all, Just for clarification sake, when people in the Freesurfer community refer to MNI tools, is this actually a reference to the MNI_Autoreg utility? I have installed netcdf 3.5, but wasn't able to find a utility that is actually called MNI tools at www.bic.mni.mcgill.ca. Also, on the

Re: problems with register.csh

2002-10-16 Thread Brian C. Schweinsburg
Hi Nick, This might be occuring because you have a newer version of mri_convert that does not support the -raw flag. You could use an older version with register.csh or try using mri_motion_correct2 (i think that is the name). The latter works really well, but you will need to install all of the