Re: [galaxy-dev] uploads stuck in history

2012-03-08 Thread Leandro Hermida
Hello, We don't use the nginx module kind regards, Leandro On Wed, Mar 7, 2012 at 4:42 PM, Jorrit Boekel jorrit.boe...@scilifelab.se wrote: Hi Nate, I wasn't before, but I switched to nginx now. Non-uploading is still happening in firefox (10.0.2 on ubuntu 11.10). I can't be 100% sure

Re: [galaxy-dev] uploads stuck in history

2012-03-08 Thread Bossers, Alex
...@lists.bx.psu.edu [mailto:galaxy-dev-boun...@lists.bx.psu.edu] Namens Leandro Hermida Verzonden: donderdag 8 maart 2012 12:43 Aan: Jorrit Boekel CC: galaxy-dev@lists.bx.psu.edu Onderwerp: Re: [galaxy-dev] uploads stuck in history Hello, We don't use the nginx module kind regards, Leandro On Wed, Mar 7, 2012

Re: [galaxy-dev] uploads stuck in history

2012-03-07 Thread Jorrit Boekel
Hi Nate, I wasn't before, but I switched to nginx now. Non-uploading is still happening in firefox (10.0.2 on ubuntu 11.10). I can't be 100% sure that my nginx install was correct, but it's definitely serving galaxy and not complaining. Is there any way to verify uploads are processed

Re: [galaxy-dev] uploads stuck in history

2012-03-05 Thread Nate Coraor
By any chance, do you all happen to be using the nginx upload module? I am guessing not. --nate On Feb 23, 2012, at 3:16 AM, Bossers, Alex wrote: I confirm the same strange behaviour since some of the last updates on the central version. We are at the latest now. It is also with medium

Re: [galaxy-dev] uploads stuck in history

2012-03-05 Thread Luciano Cosme
I had same issue recently. I tried to upload files locally and give same error (from 50Mb or 17Gb as admin). The files never finish uploading. A few days ago I tried to upload around 20 files (up to 200Mb), most of them uploaded normally, but some wouldn't. I will try a different browser them

Re: [galaxy-dev] uploads stuck in history

2012-03-05 Thread Luciano Cosme
Hi, I was trying to upload data again and here is the error message that I get: Can't create peek [Errno 2] No such file or directory: '/home/koala2/galaxy-dist/database/files/000/dataset_24.dat' Exception happened during processing of request from

Re: [galaxy-dev] uploads stuck in history

2012-02-23 Thread Bossers, Alex
I confirm the same strange behaviour since some of the last updates on the central version. We are at the latest now. It is also with medium (10Mb+ tarballs) AND large files! Furthermore its seems to be in FireFox only They upload fine using IE8 or 9. Didn't test other browsers though.

Re: [galaxy-dev] uploads stuck in history

2012-02-22 Thread Hans-Rudolf Hotz
Hi I guess we see similar things: a new history item is created, it turns purple, stays like this apparently forever while no job id is created (ie I don't see the job in any of the report tools). To be honest we ignore them, because: a) it only (as far as I can tell) happens with big data

Re: [galaxy-dev] uploads stuck in history

2012-02-22 Thread Leandro Hermida
Hi all, We get the behavior mentioned some times too, its not reproducible just like you mentioned. Some times it happens with small files, some times with large files and again as you said it doesn't happen all the time. Now I haven't seen this yet on our Galaxy dev server which is the latest

Re: [galaxy-dev] uploads stuck in history

2012-02-22 Thread Jorrit Boekel
Hi, I haven't been patient enough to wait really long, but I can give that a try. As Leandro mentioned, I've also seen it in kilobyte to megabyte sized files. My Galaxy is forked from the latest galaxy-dist. cheers, jorrit On 02/22/2012 04:47 PM, Leandro Hermida wrote: Hi all, We get