[gmx-users] PRODRG tools

2011-07-29 Thread Liu Shiyong
Dear all, Is there any other free tool like PRODRG ? PRODRG server couldn't read PDB file from user any more. It 's not easy to get a free version asap. Best Shiyong -- Shiyong Liu -- Biomolecular Physics and Modeling

Re: [gmx-users] PRODRG tools

2011-07-29 Thread Justin A. Lemkul
Liu Shiyong wrote: Dear all, Is there any other free tool like PRODRG ? PRODRG server couldn't read PDB file from user any more. It 's not easy to get a free version asap. You can contact the maintainers for a standalone version of PRODRG. Then you can run it whenever you want.

Re: [gmx-users] PRODRG tools

2011-07-29 Thread jorge_quintero
Actually, you can use other parametrization tools like antechamber (for amber) or cgenff (for charmm). Liu Shiyong wrote: Dear all, Is there any other free tool like PRODRG ? PRODRG server couldn't read PDB file from user any more. It 's not easy to get a free version asap. You can