Re: [gmx-users] Diffusion/PBC

2013-11-05 Thread Tsjerk Wassenaar
Hi Debashis, Makes sure that the anion and receptor are together in the reference structure you use for trjconv -pbc nojump Cheers, Tsjerk On Tue, Nov 5, 2013 at 8:12 AM, Debashis Sahu debashis.sah...@gmail.comwrote: Dear All, I have an problem related to jumping trajectory.

Re: [gmx-users] Diffusion/PBC

2013-11-05 Thread Trayder Thomas
Your best bet is probably to center everything on the receptor. That will prevent jumping of the receptor only, which is hopefully all you need. -Trayder On Tue, Nov 5, 2013 at 7:14 PM, Tsjerk Wassenaar tsje...@gmail.com wrote: Hi Debashis, Makes sure that the anion and receptor are