[gmx-users] How to maintain the same exact positions of the protein and ligand in the extracted frame/pdb file as they were in the trajectory form?

Hi, I'm a student at National Taiwan University doing research on protein-ligand interactions using MD simulations with GROMACS (version 4.5.3). In our simulations, we placed a protein (group A) and a ligand (group B) in a box under periodic boundary condition and ran for 20ns. I am trying to

Re: [gmx-users] How to maintain the same exact positions of the protein and ligand in the extracted frame/pdb file as they were in the trajectory form?

On 4/06/2012 6:18 PM, Wayne Chen wrote: Hi, I'm a student at National Taiwan University doing research on protein-ligand interactions using MD simulations with GROMACS (version 4.5.3). In our simulations, we placed a protein (group A) and a ligand (group B) in a box under periodic boundary