[gmx-users] Problem in visualizing protein-ion complex trajectory in vmd

Dear gromacs users, I am running steered MD simulation using Plumed plugin in gromacs for a system consisting of Protein-Mg-GTP complex. I have to calculate the distance of specific atoms with Mg and GTP. While visualizing the trajectories using vmd, I am encountering some problems. 1) While

Re: [gmx-users] Problem in visualizing protein-ion complex trajectory in vmd

On 15/05/2012 10:22 PM, neeru sharma wrote: Dear gromacs users, I am running steered MD simulation using Plumed plugin in gromacs for a system consisting of Protein-Mg-GTP complex. I have to calculate the distance of specific atoms with Mg and GTP. While visualizing the trajectories using