Re: [HCP-Users] BedpostX for 7T Diffusion data

Hi Kamal, No, we have not released bedpostX processed 7T diffusion data on HCP Young Adult subjects due to competing priorities, such as the advent of the Lifespan HCP-Development and HCP-Aging projects. Best, Jenn Jennifer Elam, Ph.D. Scientific Outreach, Human Connectome Project

Re: [HCP-Users] "activation" tables for reporting pscalar results

Spherical coordinates (latitude and longitude) concisely encode precise locations on an atlas surface and on individuals registered to the atlas in a way that respects cortical surface topology. Thus, they have inherent advantages over conventional stereotaxic coordinates in the context of the

Re: [HCP-Users] Probabilistic tractography for dense connectome

Hi Aaron You need the PreTractography script, available in one of the branches of the WU-pipelines. https://github.com/Washington-University/HCPpipelines/tree/diffusion-tractography/DiffusionTractography Best wishes Stam On 26 Apr 2019, at 15:50, Aaron C mailto:aaroncr...@outlook.com>>

Re: [HCP-Users] Probabilistic tractography for dense connectome

Hi Matt, Thank you for letting me know. The full command I mentioned is as follows: probtrackx2 --samples=../T1w/Diffusion.bedpostX/merged \ --mask=../T1w/Diffusion.bedpostX/nodif_brain_mask \ --xfm=xfms/standard2acpc_dc \ --invxfm=xfms/acpc_dc2standard --seedref=T1w_restore.2.nii.gz \