com>
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tu.com/;
BUG_REPORT_URL="http://bugs.launchpad.net/ubuntu/;
VERSION_CODENAME=xenial
UBUNTU_CODENAME=xenial
*
*
*
I have also tried the same pipeline on 2 other computers with
different RAMs and I am getting the same error.
*
*
Do you please have an idea why I am getting this error and how can
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ase advise. Thank you!
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ad
FSL, but I wanted to see whether I've missed something.
Thanks!
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steps to follow to have them running? I am using a MacPro.
Much appreciation for your help.
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.edu <mailto:glass...@wustl.edu>>
*Sent:* Wednesday, June 28, 2017 4:00:56 PM
*To:* Brown, Tim; hcp-users@humanconnectome.org
<mailto:hcp-users@humanconnectome.org>; Mandelli, Maria Luisa
*Cc:* Dierker, Donna
*Subject:* Re: [HCP-Users] pipeline structural PostFreesurfer wmparc
no
sers
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very much!
But it's not very convenient if I do it every time when I need to
mount 1200-release data. The test you ask me to do yesterday can mount
1200-release data directly, right?
Best,
Qinqin Li
On 05/16/2017 03:04，Timothy B. Brown<tbbr...@wustl.edu>
<mailto:tbbr...@wustl.edu> wrote
with:
s3fs#hcp-openaccess:/HCP_900
Change the start of that line to:
s3fs#hcp-openaccess:/HCP_1200
Once you make this change and /stop and restart your instance/, then
what is mounted at /s3/hcp should be the 1200 subjects release data.
Tim
On 05/15/2017 10:07 AM, Timothy B. Brown wrote:
Dear
Li
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the contents of this information is strictly prohibited. If you have
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telephone or return mail.
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reqs the same for 3.4.0 that I already have installed? The
documentation points to the 3.4.0 release notes.
Thanks
-M
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e
instead of using the s3 tools for copying the data file by file.
Any hint would be appreciated.
Cheers,
Denis
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>
>
> Thanks Vasudev
>
>
>
>
>
> On 24 May 2016 at 19:43, Timothy B. Brown <tbbr...@wustl.edu> wrote:
>> Do you already have a cluster set up and available, or are you
>> looking to set up the cluster?
>>
>> If you are looking to set up a cluster, do
gt; you are not the intended recipient, be advised that any unauthorized
> use, disclosure, copying or the taking of any action in reliance on
> the contents of this information is strictly prohibited. If you have
> received this email in error, please immediately notify the sender via
&g
mi`
>> $
>>
>> For the installation and setup of SGE, I did them again as this link
>> https://scidom.wordpress.com/2012/01/18/sge-on-single-pc/
>>
>> Installing and Setting Up Sun Grid Engine on a Single ...[1]
>> scidom.wordpress.com
>> Click on the “U
> ---
> mainqueue@localhost BIP 0/0/31 -NA- -NA-
> au
>
> Thanks.
>
> Best,
> Gengyan
>
> Research Assistant
> Medical Physics, UW-Madison
>
> ____________
cognize some thing which i cannot could you please correct me
>
> Thanks Vasudev
>
> On 17 March 2016 at 18:38, Timothy B. Brown <tbbr...@wustl.edu> wrote:
>> Vasudev,
>>
>> On 14 Mar 2016 at 12:13, Dev vasu <vasudevamurthy.devulapa...@gmail.
or the subjects that i use , We have not done any Field map
> acquisition.
>
>
> Thanks,
> Vasudev
>
>
>
> On 17 March 2016 at 19:01, Timothy B. Brown <tbbr...@wustl.edu> wrote:
>> Vasudev,
>>
>> Yes, that is very likely to be the proble
quot;MagnitudeInputName" in SeimensFieldMapProcessingAll.sh, Can i
> possibly comment out the necessary sections of code to avoid
> generating Magnitude_brain and Magnitude_brain_mask images
>
>
> Thanks Vasudev
>
> On 17 March 2016 at 21:37, Timothy B. Brown <tbbr...@wust
before trying to
run the FreeSurfer pipeline.
Regards,
Tim
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The material in this message is priva
d by the
PreFreeSurferPipeline.sh script. They are also used as inputs to several
subsequent pipelines including FreeSurferPipeline.sh,
PostFreeSurferPipeline.sh, and GenericfMRIVolumeProcessingPipeline.sh.
Regards,
Tim
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.sh and setting up the
environment variables in a script like
Examples/Scripts/SetUpHCPPipeline.sh.
4. Similarly, do not use a modified version of FreeSurferPipeline.sh,
instead use the same approach as I've recommended for the
PreFreeSurferPipeline.sh scrip
umpy directory but it seems there is
> no numpy installed
>
>
" imp.find_module('numpy')
> Traceback (most recent call last):
>
File "", line 1, in
>
ImportError: No module named numpy "
>
>
> I have searched in python 2.7/dist-packages i could only find nipy
u please let me know the reason for the error.
>
>
> Thanks
>
>
> Vasudev
>
> On 10 March 2016 at 21:36, Timothy B. Brown <tbbr...@wustl.edu> wrote:
>> Vasudev,
>>
>> It seems like you may need to provide the Python environment with
>> some
trusty-updates/main
amd64 Packages
>
100 /var/lib/dpkg/status
>
1:1.8.1-1ubuntu1 0
>
500 http://de.archive.ubuntu.com/ubuntu/ trusty/main amd64 Packages "
>
>
> Could you please let me know how shall i resolve it.
>
>
>
> Thanks
> Vasudev
>
>
>
>
&
to establish all the study
>> protocols in workbench as part of my graduate studies. I am totally
>> new to this and i am trying my best to resolve my issues on my own,
>> If in case some problems arise i will contact your team, I thank HCP
>> community for being patient
sers@humanconnectome.org
>>> http://lists.humanconnectome.org/mailman/listinfo/hcp-users
>
>
> The materials in this message are private and may contain Protected
> Healthcare Information or other information of a sensitive nature. If
> you are not the intended recipient, b
the FreeSurferPipeline I got the same
> error "Error: no output filename specified!" . I've attached the
> FreeSurferPipeline output and error log here for you reference.
>
> I appreciate your help and time.
>
> Thank you, Mahmoud
>
> On Fri, Dec 18, 2015 at 11:39 AM
humanconnectome.org
>
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The material in this message
y_parameters
You will, of course, need to replace both occurrences of 100307 in the
above with the subject-id number for the subject for which you would
like to download the file.
See
http://www.mail-archive.com/hcp-users%40humanconnectome.org/msg01347.html
for some further information and links a
/listinfo/hcp-users
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The material in this message is private and may contain Protected Healthcare
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. Being a command line tool, it should be
easy to use in a script.
Tim
On Wed, Jun 24, 2015, at 15:02, Timothy B. Brown wrote:
Hi Ben,
You should be able to access the files you are trying to access by
prepending the following to a URI for the files:
https://db.humanconnectome.org/data
, Timothy B. Brown
tbbr...@wustl.edu wrote:
Hi Levi,
Yes, it would be helpful in investigating the error you are receiving
to see both the script you are running and a capture of the exact
output you are getting from a run of the script. That output might
help to determine if the ERROR: could
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for reference.
Thank you so much!
Levi Solomyak
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. mailto:dkumar.in...@gmail.com
6. mailto:bro...@mir.wustl.edu
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