Re: [HCP-Users] DICOM to NIFTI in HCP standard

On Thu, 16 Aug 2018, Harms, Michael wrote: >Sorry, but not to my knowledge. We use ‘dcm2niix’ currently for DICOM to >NIFTI conversion (‘dcm2niix’ generates nice .json files containing a bunch >of relevant parameters of the scan). That particular step is pretty >straightforward.

Re: [HCP-Users] Neighbors of a vertex

On Wed, 28 Feb 2018, Shankar Tumati wrote: > Hello experts, > I would like to get a list of neighbors of each vertex in a 32k surface file. > How can I do this with workbench? If not with workbench, is there another way > to get this info? quick one: we rely on neighborhood information in

Re: [HCP-Users] CIFTI tools in the Python

http://nipy.org/nibabel/reference/nibabel.cifti2.html ? On October 12, 2017 12:18:32 AM EDT, Aaron Crank wrote: >Dear HCP experts, > > >I have a question about loading CIFTI files in the Python. Would you >please suggest if there are any well-established tools in the

Re: [HCP-Users] (files) listing for file bundles

Thank you Michael and Jennifer again! On Tue, 06 Dec 2016, Elam, Jennifer wrote: >To add to what Mike Harms just wrote, it still sounds like you are >thinking of the packages as data bundles for groups of subjects. yes -- indeed -- it was probably the main reason for a bit of disconnect

Re: [HCP-Users] (files) listing for file bundles

On Tue, 06 Dec 2016, Elam, Jennifer wrote: >A listing of the by subject unpacked files available, organized by >modality and processing level, are available in Appendix 3 of the >Reference Manual. >The files are listed there as they unpack into a standard directory >structure.

Re: [HCP-Users] (files) listing for file bundles

On Tue, 06 Dec 2016, Elam, Jennifer wrote: >A listing of the by subject unpacked files available, organized by >modality and processing level, are available in Appendix 3 of the >Reference Manual. >The files are listed there as they unpack into a standard directory >structure.

Re: [HCP-Users] (files) listing for file bundles

On Tue, 06 Dec 2016, Hodge, Michael wrote: > I've attached unzip -l output for the packages of a couple of subjects. One > has MEG data in addition to the standard 3T data, and the other has 7T data > in addition to the 3T data, so you can see what's in the packages. Thank you Michael!

[HCP-Users] (files) listing for file bundles

Dear HCP gurus, db.humanconnectome.org/ provides convenient bundles of subjects/data. Is it possible to obtain the lists of files (I guess as a subset of files within hcp-openaccess/HCP or hcp-openaccess/HCP_900 s3 buckets) which comes within each bundle? (without downloading all those bundles

[HCP-Users] Easier navigation in volume 3 pane view?

Dear Developers of the workbench, in the Volume view where you have e.g. all 3 panes visible, it would be great if there was an easy way to point to the location defining which slices should be visible. I did find previous question/discussion

[HCP-Users] 0.85 is coming!!! Was: Workbench suddenly closes itself

On Mon, 07 Apr 2014, Jennifer Elam wrote: The latest version Workbench beta 0.85 release has not yet gone live, but is set to occur later today, hopefully by 5pm CDT. Look for the announcement, download the new version and check to see if the problem still occurs. ah - awesome --

Re: [HCP-Users] 0.85 is coming!!! Was: Workbench suddenly closes itself

On Mon, 07 Apr 2014, Timothy Coalson wrote: As per the announcement, yes, it does include the source (on github, [1]https://github.com/Washington-University/workbench, see releases for the code matching the released binaries), with some basic instructions for building (src/README

Re: [HCP-Users] nibabel gifti files with workbench

On Sat, 08 Mar 2014, David Van Essen wrote: As a quick update, we are aiming for the next workbench release (v0.85; cifti-2 compatibility), including source code, to occur in about a month. That is great -- thanks for the update! It would be especially nice if source release would be

Re: [HCP-Users] nibabel gifti files with workbench

On Sat, 01 Mar 2014, Russ Poldrack wrote: hi all - it turns out that gifti files created by nibabel.gifti.giftiio are not readable by connectome workbench reciprocally related question which I have not got answer in my previous inquiries: are/will be(?) sources of connectome workbench

Re: [HCP-Users] Is proprietary aspera browser plugin the only way to download the HCP Open data?

On Tue, 20 Aug 2013, Marcus, Dan wrote: There are a couple of additional data access methods that we'll be implementing down the road. Working with the INCF, we'll be making the data accessible over INCF Dataspace. We will also be putting the packages up on the Amazon cloud. Thank you Dan