Re: [HCP-Users] Probabilistic tractography for dense connectome

2019-05-17 Thread Timothy Coalson
May 1, 2019 at 12:27 PM > To: Stamatios Sotiropoulos > Cc: Matt Glasser , "hcp-users@humanconnectome.org" < > hcp-users@humanconnectome.org> > Subject: Re: [HCP-Users] Probabilistic tractography for dense connectome > > Hi Stam, > > I tried your PreTracto

Re: [HCP-Users] Probabilistic tractography for dense connectome

2019-05-17 Thread Aaron C
, 2019 7:05 PM To: Glasser, Matthew Cc: Aaron C; hcp-users@humanconnectome.org Subject: Re: [HCP-Users] Probabilistic tractography for dense connectome This may be the reason indeed. The Pretractography script creates both native space and MNI space ROIs. You need to make sure you use the MNI ones

Re: [HCP-Users] Probabilistic tractography for dense connectome

2019-05-02 Thread Stamatios Sotiropoulos
ingham.ac.uk>> Cc: Matt Glasser mailto:glass...@wustl.edu>>, "hcp-users@humanconnectome.org<mailto:hcp-users@humanconnectome.org>" mailto:hcp-users@humanconnectome.org>> Subject: Re: [HCP-Users] Probabilistic tractography for dense connectome Hi Stam, I

Re: [HCP-Users] Probabilistic tractography for dense connectome

2019-05-01 Thread Glasser, Matthew
iropou...@nottingham.ac.uk>> Cc: Matt Glasser mailto:glass...@wustl.edu>>, "hcp-users@humanconnectome.org<mailto:hcp-users@humanconnectome.org>" mailto:hcp-users@humanconnectome.org>> Subject: Re: [HCP-Users] Probabilistic tractography for dense connectome Hi Stam, I tried

Re: [HCP-Users] Probabilistic tractography for dense connectome

2019-05-01 Thread Aaron C
users@humanconnectome.org> Cc: Stamatios Sotiropoulos Subject: Re: [HCP-Users] Probabilistic tractography for dense connectome Not as far as I am aware, but Stam might know. Matt. From: mailto:hcp-users-boun...@humanconnectome.org>> on behalf of Aaron C mailto:aaroncr...@outlook.com>

Re: [HCP-Users] Probabilistic tractography for dense connectome

2019-04-26 Thread Stamatios Sotiropoulos
s@humanconnectome.org> Cc: Stamatios Sotiropoulos Subject: Re: [HCP-Users] Probabilistic tractography for dense connectome Not as far as I am aware, but Stam might know. Matt. From: mailto:hcp-users-boun...@humanconnectome.org>> on behalf of Aaron C mailto:aaroncr...@outlook.com>> D

Re: [HCP-Users] Probabilistic tractography for dense connectome

2019-04-26 Thread Aaron C
:hcp-users@humanconnectome.org>" mailto:hcp-users@humanconnectome.org>> Subject: [HCP-Users] Probabilistic tractography for dense connectome Dear HCP experts, I have a question about the probabilistic tractography command used for generating dense connectome (https://wustl.ap

Re: [HCP-Users] Probabilistic tractography for dense connectome

2019-04-25 Thread Glasser, Matthew
>" mailto:hcp-users@humanconnectome.org>> Subject: [HCP-Users] Probabilistic tractography for dense connectome Dear HCP experts, I have a question about the probabilistic tractography command used for generating dense connectome (https://wustl.app.box.com/s/wna2cu94pqgt8zskg687mj

[HCP-Users] Probabilistic tractography for dense connectome

2019-04-25 Thread Aaron C
Dear HCP experts, I have a question about the probabilistic tractography command used for generating dense connectome (https://wustl.app.box.com/s/wna2cu94pqgt8zskg687mj8zlmfj1pq7). Are there any shared scripts for generating "pial.L.asc", "white.L.asc", "Whole_Brain_Trajectory_ROI_2.nii.gz",