Re: [HCP-Users] Preprocessing questions

2015-02-12 Thread Anders Eklund
I'm giving an fMRI course and would like to show the effect of distortion correction (b0 field). - Anders Den 12 feb 2015 18:14 skrev Glasser, Matthew glass...@wusm.wustl.edu: The code for that derivation (written by Mark Jenkinson) is posted online:

Re: [HCP-Users] Preprocessing questions

2015-02-12 Thread Glasser, Matthew
We don’t distribute those images, as they are only pipeline intermediates. If you download some of the raw data and run the pipelines yourself (https://github.com/Washington-University/Pipelines), you could show these two images:

Re: [HCP-Users] Duplicate names in ${HCPPIPEDIR_Config}/FreeSurferAllLut.txt ?

2015-02-12 Thread Alex Cohen
Hi Matt, I see you still keep similar hours... Interesting... wb_command's current behavior is to do the following... I wonder if the name really should be changed... Level: WARNING Method: static void caret::OperationVolumeLabelImport::useParameters(caret::OperationParameters *,

Re: [HCP-Users] Duplicate names in ${HCPPIPEDIR_Config}/FreeSurferAllLut.txt ?

2015-02-12 Thread Glasser, Matthew
That is just a warning and doesn’t have any practical impact that I am aware of. Peace, Matt. From: Alex Cohen alexco...@gmail.com Reply-To: alexco...@gmail.com alexco...@gmail.com Date: Thursday, February 12, 2015 at 11:27 PM To: Matt Glasser glass...@wusm.wustl.edu Cc:

Re: [HCP-Users] Duplicate names in ${HCPPIPEDIR_Config}/FreeSurferAllLut.txt ?

2015-02-12 Thread Timothy Coalson
Correct, it still produces a valid label file, even if it does sound rather annoyed. Side note, if it would have to go past _99 to resolve a name collision, it instead gives up and throws an error. I figured, if your label names collide that often, you must have done something you didn't mean to