Re: [HCP-Users] geodesic-distance

2016-05-31 Thread Timothy Coalson
It is possible to get a center of gravity of a surface ROI, but it is more involved (and doesn't result in a vertex). We don't really use ROI centers, as the entire ROI is generally more informative. See: https://www.mail-archive.com/hcp-users%40humanconnectome.org/msg02495.html With the

Re: [HCP-Users] Referencing behavioural data abbreviations

2016-05-31 Thread Burgess, Greg
Hi Dragana, Descriptions of the “In-scanner performance measures” are available in ConnectomeDB. Add the In-scanner behavioral performance tab and hover over the variable name in the header, or selecting “Data Dictionary”. We plan to update the wiki entry for the Data Dictionary with these and

Re: [HCP-Users] [SPAM] ERROR: mpr2mni305 failed in FreesurferPipelineBatch.sh

2016-05-31 Thread Harms, Michael
Are you saying that you now get this error on every subject, or just this one particular subject?  And were you able to run anyone successfully after your FS v6 development version install?    --  Michael Harms, Ph.D.

Re: [HCP-Users] [SPAM] ERROR: mpr2mni305 failed in FreesurferPipelineBatch.sh

2016-05-31 Thread Barbara Kreilkamp
Thank you Michael and Donna, I'm kind of suprised to be running into this error as I've successfully run HCP on >70 participants so far, and only now I am getting the error. Perhaps I should say that I installed Freesurfer version 6 (development version) alongside it once, but all the paths

Re: [HCP-Users] [SPAM] ERROR: mpr2mni305 failed in FreesurferPipelineBatch.sh

2016-05-31 Thread Dierker, Donna
Hi Barbara, It looks like there was a problem with a runtime library Freesurfer needs. Have a look at this similar issue: https://www.mail-archive.com/freesurfer@nmr.mgh.harvard.edu/msg40092.html I'd report your issue to the Freesurfer mailing list:

[HCP-Users] Join NIH in a Celebration of the Conclusion of the First Phase of the Human Connectome Program

2016-05-31 Thread Farber, Greg (NIH/NIMH) [E]
Please join the National Institutes of Health (NIH) on June 20, 2016 at 12:30 pm Eastern Time, as we celebrate the success of the first phase of the Human Connectome Project (HCP). The meeting is open to you either in person (register

[HCP-Users] ERROR: mpr2mni305 failed in FreesurferPipelineBatch.sh

2016-05-31 Thread Barbara Kreilkamp
Dear HCP experts, I am running freesurfer-Darwin-lion-stable-pub-v5.3.0 on MAC 10.10.5. Could you please help me with this error message? I think it relates to the library, this is what it states in talairach_avi.log. Running recon-all directly worked, but after that I am missing some files