gt; MNINonLinear/Results/${fMRIName}/${fMRIName}.nii.gz@$
> {StudyFolder}/${Subject}/MNINonLinear/Results/${fMRIName}/${fMRIName}.nii.gz
> 2000 ${StudyFolder}/${Subject}/MNINonLinear/Results/${
> ConcatName}/${ConcatName}.nii.gz
>
> Peace,
>
> Matt.
>
> From: Sang-Young
gt;>
> Cc: Stephen Smith <st...@fmrib.ox.ac.uk <mailto:st...@fmrib.ox.ac.uk>>,
> "hcp-users@humanconnectome.org <mailto:hcp-users@humanconnectome.org>"
> <hcp-users@humanconnectome.org <mailto:hcp-users@humanconnectome.org>>
> Subject: Re: [HCP-
sers@humanconnectome.org<mailto:hcp-users@humanconnectome.org>"
<hcp-users@humanconnectome.org<mailto:hcp-users@humanconnectome.org>>
Subject: Re: [HCP-Users] Combining rfMRI data for different phase encoding
directions
Dear Matt:
I ran the multi-run ICA+FIX according to your guideline. Bu
z
>
> Peace,
>
> Matt.
>
> From: Sang-Young Kim <sykim...@gmail.com>
> Date: Friday, October 6, 2017 at 4:17 PM
> To: Matt Glasser <glass...@wustl.edu>
> Cc: Stephen Smith <st...@fmrib.ox.ac.uk>, "hcp-users@humanconnectome.org"
> <hcp-user
org <mailto:hcp-users@humanconnectome.org>"
> <hcp-users@humanconnectome.org <mailto:hcp-users@humanconnectome.org>>
> Subject: Re: [HCP-Users] Combining rfMRI data for different phase encoding
> directions
>
> Thanks! Matt!
>
> I have one more
@humanconnectome.org>> on behalf of Stephen Smith
>> <st...@fmrib.ox.ac.uk <mailto:st...@fmrib.ox.ac.uk>>
>> Date: Friday, October 6, 2017 at 1:49 AM
>> To: Sang-Young Kim <sykim...@gmail.com <mailto:sykim...@gmail.com>>
>> Cc: "hcp-users@humanconnectom
tome.org<mailto:hcp-users@humanconnectome.org>>
Subject: Re: [HCP-Users] Combining rfMRI data for different phase encoding
directions
Thanks! Matt!
I have one more following-up question. In order to run the script
"hcp_fix_multi_run", we have to concatenate all the data t
:hcp-users@humanconnectome.org>"
<hcp-users@humanconnectome.org<mailto:hcp-users@humanconnectome.org>>
Subject: Re: [HCP-Users] Combining rfMRI data for different phase encoding
directions
Hi, Matt and Stephen:
Thanks for your responses. So I will try below three options to see
<mailto:st...@fmrib.ox.ac.uk>>
> Date: Friday, October 6, 2017 at 1:49 AM
> To: Sang-Young Kim <sykim...@gmail.com <mailto:sykim...@gmail.com>>
> Cc: "hcp-users@humanconnectome.org <mailto:hcp-users@humanconnectome.org>"
> <hcp-users@humanconnect
m<mailto:sykim...@gmail.com>>
Cc: "hcp-users@humanconnectome.org<mailto:hcp-users@humanconnectome.org>"
<hcp-users@humanconnectome.org<mailto:hcp-users@humanconnectome.org>>
Subject: Re: [HCP-Users] Combining rfMRI data for different phase encoding
directions
H
Hi - I think your main two choices are whether to run FIX on each 5min run
separately, or to preprocess and concatenate each pair of scans from each
session and run FIX for each of the 4 paired datasets. You could try FIX both
ways on a few subjects and decide which is working better.
Cheers.
Dear Experts:
We have acquired rfMRI dataset with A-P and P-A phase encoding direction and
the data was acquired in eight 5-minute runs split across four imaging
sessions. We have processed the data using HCP pipelines (e.g., PreFreeSurfer,
FreeSurfer, PostFreeSurfer, fMRIVolume, fMRISurface
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