[HCP-Users] Fwd: Error in fMRI Volume Processing Pipeline

I called it as ./GenericfMRIVolumeProcessingPipelineBatch.sh --runlocal from the folder with the Example scripts, like i previously did with the structural ones. I filled in "NONE" everywhere except for DistortionCorrection="FIELDMAP", MagnitudeInputName, PhaseInputName (and of course things like

Re: [HCP-Users] unsmoothed ROI to smoothed cifti correlation

Hi Ely, We don’t have a function like this yet, but have been discussing making one. I think matlab is your best bet at this time. Peace, Matt. From: > on behalf of "Ely, Benjamin"

[HCP-Users] unsmoothed ROI to smoothed cifti correlation

Hi everyone, I'm running some connectivity analyses following the procedure outlined in this thread https://www.mail-archive.com/hcp-users@humanconnectome.org/msg04403.html. Since my ROIs are fairly small, I'd like to calculate the correlation between the mean unsmoothed timeseries of each

Re: [HCP-Users] unsmoothed ROI to smoothed cifti correlation

Hi Matt, Thanks for getting back to me - after some further tinkering, I think this command sequence yields the desired output: 1) Extract mean unsmoothed ROI data to text: wb_command -cifti-roi-average ${subject}_${run}.dtseries.nii roi_data_${sub}_${run}_unsmoothed.txt -vol-roi

Re: [HCP-Users] unsmoothed ROI to smoothed cifti correlation

Hi Ely, That looks okay to me on a quick pass, but perhaps Tim will see something I don’t. Peace, Matt. From: "Ely, Benjamin" > Date: Wednesday, May 3, 2017 at 11:46 PM To: Matt Glasser >,