Re: [HCP-Users] Questions regarding coordinates infomation of vertex

2017-03-20 Thread Irisqql0922
find it. Thanks again, Qinqin lee On 03/20/2017 20:03,Glasser, Matthew<glass...@wustl.edu> wrote: In individual subjects, you can use the midthickness surface coordinates as the 3D coordinates. Peace, Matt. From: <hcp-users-boun...@humanconnectome.org> on behalf of

[HCP-Users] Questions regarding coordinates infomation of vertex

2017-03-20 Thread Irisqql0922
Dear HCP teams, I am trying to threshold surface data of file *.dscalar.nii , and after that, I don't know how to link data remains in the matrix with its space coordinates. Is there any matrix contains the information linking vertex index in the matrix with its space location? If there is

Re: [HCP-Users] Questions regarding coordinates infomation of vertex

2017-03-20 Thread Irisqql0922
https://github.com/nipy/nibabel Tim On Mon, Mar 20, 2017 at 8:39 AM, Irisqql0922 <irisqql0...@163.com> wrote: Sorry, I thought Matt misunderstanding my words. Ok, I will check the file *midthickness*.sur.gii. Thank you Donna, and thank you Matt^_^ Qinqin Lee On 03/20/2017 21:25,Di

[HCP-Users] info about head motion and individual brain size

2017-04-20 Thread Irisqql0922
Dear HCP teams, I need parameters concerning head motion(e.g., FD) to do my task fMRI analyse and data about subjects' brain size to analyze structure data now (they will both be used in regression). So I wonder is there any file on AWS or connectome DB include these information (I cannot

[HCP-Users] Problem regarding to mount 1200-release data to NITRIC-CE

2017-05-15 Thread Irisqql0922
Dear hcp teams, I sorry to bother you again with same problem. I used default options and mounted data successfully. But when I checked /s3/hcp, I found that data in it has only 900 subjects. Obviously, it's not the latest 1200-release data. Since I want to analyse the latest version of

[HCP-Users] using Amazon S3 on NITRC-CE

2017-05-09 Thread Irisqql0922
Dear HCP teams, I am now trying to use Amazon S3 on NITRC-CE, and I stucked with mounting data from hcp-openaccess bucket to my instance. After I filled in blanks, the system told me I had mount it successfully. But when I check the folder though terminal, it shows nothing below. I

Re: [HCP-Users] using Amazon S3 on NITRC-CE

2017-05-09 Thread Irisqql0922
unting it in the terminal like "sudo mount /s3mnt" and see what error you get. You may have entered the authentication incorrectly, or requested a new authentication token, but then entered the old, expired one. Tim On Tue, May 9, 2017 at 2:12 AM, Irisqql0922 <irisqql0...@163.co

Re: [HCP-Users] Problem regarding to mount 1200-release data to NITRIC-CE

2017-05-16 Thread Irisqql0922
CP_900 listing works, but the HCP_1200 listing does not, then we will need to arrange for you to get different credentials. Tim On 05/15/2017 08:48 AM, Irisqql0922 wrote: Dear hcp teams, I sorry to bother you again with same problem. I used default options and mounted data successfully. But

Re: [HCP-Users] Problem regarding to mount 1200-release data to NITRIC-CE

2017-05-16 Thread Irisqql0922
:48 AM, Irisqql0922 <irisqql0...@163.com> wrote: ... I use command: : > ~/.passwd-s3fs If this is really the command you used, then it wouldn't work: you need "echo" at the start of it, like this: echo : > ~/.passwd-s3fs Please look at the file's contents with somethi

Re: [HCP-Users] Problem regarding to mount 1200-release data to NITRIC-CE

2017-05-15 Thread Irisqql0922
orking for both the 900 subjects release and the 1200 subjects release. If the HCP_900 listing works, but the HCP_1200 listing does not, then we will need to arrange for you to get different credentials. Tim On 05/15/2017 08:48 AM, Irisqql0922 wrote: Dear hcp teams, I sorry to bother you

[HCP-Users] Question concerning SNR info

2017-05-01 Thread Irisqql0922
Dear HCP teams, I notice that you have run CIA-FIX denoise process for rfMRI data, but it seems like there is no such process for task fMRI. Now I am working on WM data and want to find related SNR data to do some further analyse. So I wonder if there is any file containing SNR value

[HCP-Users] calculate beta and t value of new contrast

2019-01-10 Thread Irisqql0922
Laboratory of Cognitive Neuroscience and Learning | | Irisqql0922 | | irisqql0...@163.com | 签名由网易邮箱大师定制 ___ HCP-Users mailing list HCP-Users@humanconnectome.org http://lists.humanconnectome.org/mailman/listinfo/hcp-users