Re: [HCP-Users] Q1 tfMRI in native space?

2013-09-24 Thread Glasser, Matthew
So we had a chance to discuss this internally, and this appears to be the best solution right now: wb_command -metric-math "(x > 0.5) * (x < 1.5)" ${Subject}/MNINonLinear/fsaverage_LR32k/${Subject}.${Hemisphere}.BA1_ROI.32 k_fs_LR.func.gii -var x ${Subject}/MNINonLinear/fsaverage_LR32k/${Subject}.

Re: [HCP-Users] Q1 tfMRI in native space?

2013-09-23 Thread Harms, Michael
I just noticed the -cifti-parcellate command in 'wb_command', which looks like it will do the trick. cheers, -MH -- Michael Harms, Ph.D. --- Conte Center for the Neuroscience of Mental Disorders Washington University School of Medicine Dep

Re: [HCP-Users] Q1 tfMRI in native space?

2013-09-23 Thread Harms, Michael
Hi Jo, All the preprocessed fMRI data is in HCP-standard volume (MNI152) or grayordinate space. Those are contained in ${subj}/MNINonLinear/Results The subject-specific FreeSurfer labels transferred to this space and at the same surface mesh resolution are contained in ${subj}/MNINonLinear/fsaver