Hello Sam
All can be done:
Is there any possibility of viewing both the protein and the ligand in the
same frame,
which will enable me to view the ligand's docking with the protein?
either of these:
frame all;
frame *;
will do that. They are not in the same frame, but you see both. If
Mario -- Got it! http://stolaf.edu/people/hansonr/jmol/test/success.png
On Tue, Oct 11, 2011 at 8:52 AM, Robert Hanson hans...@stolaf.edu wrote:
Happy day! OK -- off to other things. Now it is in your hands for a while
-- it successfully loads and displays caffeine.xyz from the web. -- or at
So, Bob, is that a simulator of Android running in the PC?
What's its name? I searched for something like that with little success
:) great work! That'll beat iThings aside. Real molecules in the phone!
--
All
Yeah! Looks good!
Jonathan
On Oct 11, 2011, at 9:12 AM, Robert Hanson wrote:
Mario -- Got it! http://stolaf.edu/people/hansonr/jmol/test/success.png
On Tue, Oct 11, 2011 at 8:52 AM, Robert Hanson hans...@stolaf.edu wrote:
Happy day! OK -- off to other things. Now it is in your hands for a
Hello Moon
There are a couple of web applications that do that, but it is not an easy task.
Please, let us know in more detail what you need. For example, do you know in
advance
what is the sequence you want highlighted, or is this a generic need that
should work with
any protein?
For
It's a plug-in for Eclipse. You just run the project, and that's how it
runs. There are a couple of things you have to install, I think, but it was
relatively painless. It's REALLY slow, though. I haven't seen this on a real
android device, so I don't know if it's even viable. Hopefully Mario can
It works great on Android phones, not 30fps but very usable. I tested it on a
phone and a tablet with similar results. I was able to open relatively big
models (1IZL).
That said I'm chasing a bug which causes the app to slow to a crawl, still
don't know what triggers this state.
Hello Angel,
Thanks for your reply.
But can i write a extra program(for example c) to read the input PDB file
and a DNA sequence.
And then call Jmol to display the PDB file with the Highlight DNA sequence?
Thanks.
Best Regards,
Moon
2011/10/12 Angel Herráez angel.herr...@uah.es
Hello Moon
In case you are interested, here is a link to the Jmol Android application:
http://jmol.svn.sourceforge.net/viewvc/jmol/trunk/Jmol-Android/bin/JmolAndroid.apk
It's just a preliminary version -- It will probably change rapidly as we
adapt it and work out the bugs.
We would appreciate any comments
Mario, I fixed the font problem.
On Tue, Oct 11, 2011 at 8:32 PM, Mario Kosmiskas mar...@uw.edu wrote:
It works great on Android phones, not 30fps but very usable. I tested it
on a phone and a tablet with similar results. I was able to open
relatively big models (1IZL).
That said I'm
Hello Angel,
thank you so much.. It works!
Is there any possibility of invoking the script(load files protein
ligand ; cpk off...) in a
file and make it work with at the click of a button? i.e.Can I add a button
which when clicked should do the protein-ligand loading(which is now done
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