Hi,
I cannot find the interactive scripting documentation any more which
used to be here:
http://chemapps.stolaf.edu/jmol/docs/
Instead of the documentation there appears a page with Jmol related links.
I couldn't find any new link to the documentation at www.jmol.org.
Regards,
Rolf
OK, I will look into this.
Frieda
On Sep 10, 2008, at 2:10 PM, Robert Hanson wrote:
We could set up the mol2 reader to do this. BUT I have to be
convinced first that it's a real standard. What programs write
these? Is it just totally arbitrary what these IDs are? Are the
names standard?
Hi, can someone remind me of how to tell the Jmol app to open its
display window to a certain width and height? All I can find in the
archives is the following post, which seems no longer to have an
effect, and the scripting documentation is still unavailable (and I'm
not too hopeful it
There's help available for the command line, but to see it on a Windows
machine you have to use java -jar jmol.jar -h not just jmol.jar -h
java -jar jmol.jar -h
usage: Jmol
-o,--noconsole no console -- all output to sysout
-q,--quality JPG image quality (1-100;
On Sep 12, 2008, at 4:12 PM, Robert Hanson wrote:
There's help available for the command line, but to see it on a
Windows machine you have to use java -jar jmol.jar -h not just
jmol.jar -h
In Jmol app on my MacBook Pro, each of these gives an error.
java -jar jmol.jar -h
usage: Jmol
Someone more familiar with Macs help me out here
You need a terminal window and a prompt. At the prompt, on a PC at least,
you type
java -jar jmol.jar -h
That starts the program and assumes that the path to java.exe is known to
the system. If you can get that working, then you start Jmol
OK, I can open the Mac app Terminal easily enough and type the command
in (just thought you had meant the Jmol command line). I'm assuming I
have to get to the right directory and all that? Do I want to be in
the same directory as the Jmol app?
On Sep 12, 2008, at 4:32 PM, Robert Hanson
OK, now I see I need to be in the same directory as the Jmol app.
Done. The window size has changed, thank you for clarifying how to do
this. Now - is there a command to change its starting location on
screen, which currently places 90% of the window off my display?
Gratefully,
Frieda
On
Message: 2
Date: Fri, 12 Sep 2008 15:32:59 -0500
From: Robert Hanson [EMAIL PROTECTED]
Subject: Re: [Jmol-users] Jmol app - size of start-up window
To: jmol-users@lists.sourceforge.net
Message-ID:
[EMAIL PROTECTED]
Content-Type: text/plain; charset=iso-8859-1
Someone more familiar with
Bob is correct. This does work (at least with 11.4.6 and
11.6.RC14_dev) on MacOS as long as you have navigated to the
directory in which Jmol is stored. Since I'm doing development, I
keep a number of different copies of Jmol in different locations.
Maybe like me, Frieda hasn't put Jmol
Hello:
Could any of you tell me about a jmolCheckbox tutorial or any webpage using
jmolcheckbox?
I want to visualize a protein and represent different protein segments in
different colors on a webpage, where each checkbox is pointing to a
particular segment, so if I check box 1 the segment 1
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