[Jmol-users] JMol Applet :Download PDB file using a button

2010-04-08 Thread Ashika Umanga Umagiliya
Greetings all, In my JSP page, I have embbeded Jmol applet and I want to add a Jmol button which user can download the PDB file. Any tips on how to do this ? thanks in advance, umanga -- Download Intel#174; Parallel

Re: [Jmol-users] JMol Applet :Download PDB file using a button

2010-04-08 Thread Angel Herráez
Hi Umanga That would be a hyperlink pointing to the pdb file URL. With a button, the equivalent is location.href But whether that is downloaded or opened in the browser, or in a helper program, will depend on each user's browser and configuration. Maybe you can copy the link present in the PDB

[Jmol-users] http://www.xmlvm.org/iphone/

2010-04-08 Thread Rzepa, Henry
If you have not seen it, take a look at http://touchpress.com/ The e-book contains rotating 3D models, and even Stereo (with appropriate glasses). At the risk of sounding like a broken record (what is the modern metaphor for this?), I would like to put soundings out again for eg

Re: [Jmol-users] [Jmol-developers] http://www.xmlvm.org/iphone/

2010-04-08 Thread Eran Hodis
I agree completely with Henry, and in fact the idea that the world might be moving away from supporting Java is a very scary thought in terms of our beloved Jmol. The analogy to Chime's demise is exactly what Jaime Prilusky, Joel Sussman and I were discussing yesterday when thinking about the

Re: [Jmol-users] [Jmol-developers] http://www.xmlvm.org/iphone/

2010-04-08 Thread Paul Pillot
I don't think that the analogy with Chime is that relevant : in the last years of Chime uses we had to face so many problems : lack of compatibility with an increasing number of browsers and platforms, amounts of bugs for which we had to find incredible workarounds (remember the dummy scripts

[Jmol-users] Jmol Virtual Model Kit

2010-04-08 Thread Otis Rothenberger
Hello- With the inclusion of UFF minimization in Jmol, I decided to revisit an old project that I started in the early days of Chime - the design of a virtual molecular model kit that had the feel of an old Prentice Hall student model kit. During this recent Jmol stage of the project, Bob Hanson

Re: [Jmol-users] Jmol Virtual Model Kit

2010-04-08 Thread Angel Herráez
Hi Otis Quite an impressive piece of work. Congratulations! In case you want to look into this, my Firefox 3.6 (WinXP) refuses to show the video at http://www.che.ilstu.edu/osrothen/web_molecules/video/VMKquickstart.ht ml Says I should upgrade my Flash Player, but it is the latest 10.0.45.2.

Re: [Jmol-users] Jmol Virtual Model Kit

2010-04-08 Thread Brian McMahon
I agree that this is looking like a very nice tool. No problems for me in viewing the video (Firefox 3.6.3, Windows Vista Ultimate SP2). Brian On Thu, Apr 08, 2010 at 04:06:16PM +0200, Angel Herráez wrote: Hi Otis Quite an impressive piece of work. Congratulations! In case you want to

Re: [Jmol-users] Jmol Virtual Model Kit

2010-04-08 Thread Eran Hodis
Incredible!! What a great use of Jmol Eran __ From Otis Rothenberger o...@chemagic.com Sent Thu 4/8/2010 3:53 PM To jmol-users@lists.sourceforge.net Subject [Jmol-users] Jmol Virtual Model Kit Hello- With the inclusion of UFF minimization

[Jmol-users] rotateSelected and translateSelected does not work in 12.0.RC[34]

2010-04-08 Thread Daniel Lundin
Hi, I am using rotateSelected and translateSelected to superpose two protein molecules. My code works in recent 11.9 (currently, I'm using 11.9.17) versions of Jmol, but not in 12.0.RC3 nor .RC4. In 12.0.RC3 the below script fails silently, while in 12.0.RC4 I get an error message: