ZhouXibin, you need a file that has the orbital information included.
Only some formats support that.
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Hi there,
I'm using an embedded jmol for a project and it behaves quite well,
especially on Windows/IE, as the JVM seems to be faster.
I have a java applet which loads a PDB file cointaining a DNA sequence
of about 1000 base pairs. The applet and the PDB load pretty fast
(about 5 sec) and
Hi Carles
This sound strange indeed. I agree that it shouldn't take long.
I think that maybe the 100 kB is too long for some unknown memory,
stack or cache (I'm just guessing). Try cutting the script file in
several pieces and see what happens when you call them one after
another (either
Ok, I did some more testing.
First of all, now I've run all tests with the jmol app, not the applet.
Then I tested the following:
-Paint 500 bps with a script like the one I pasted on my last email
-Loading the full script at once: 17 seconds
-Splitting the script each 100
hi everyone im a student which is very new to applet, and is currently working
on a project which allows different user to have a mass chat on a website with
Jmol integrated in it,and everyone who joined into this chat will be able to
have a same view as the host, i edited some of the source
It's great you solved it, Carles
Anyway, I think that the developers should keep an eye on the 'select'
command, it is quite slow for the overall speed of jmol
I suspect that Jmol may be doing this:
select C1, N2, C3, O4, N5, C6, N7, C8, C9, C10, N11, C12, O13, N14,
C15, O16, C17, C18,
Hi Mike, and welcome to Jmol
im a studentwhich is very new to applet, and iscurrently working
on a project which allows different user to have a mass chat on a
websitewith Jmol integrated in it,
and everyone who joined into this chat will be able to have a same
view as the host,
This
Thanks! That kind of solves the issue. It isn't lighting fast, but
I've come down to 12 seconds in order to paint 2000 bps, which is an
impressive improvement over the previous 8+ minutes.
Anyway, I think that the developers should keep an eye on the 'select'
command, it is quite slow for
El 10 Jan 2008 a las 23:38, Mikeno Chua escribió:
I had tried doing this too, but it seems like theres a problem with
exporting the stuff i edited into a jar file
and this is one problem im trying to solve,
ori should say, anyway tat i could getit working.. =)
I can't help there, sorry.
David, there was no attachment intended. I was out of home, so it
must have been some trick of the webmail client or server.
This was the (simple) message:
..
Hello to all Jmol users, happy Christmas holidays and best wishes for
the coming year!
Well, technical problems delayed
Angel posted the following last month, and on my digest it appear as
follows:
Message: 8
Date: Fri, 28 Dec 2007 17:39:36 +0100
From: Angel Herraez [EMAIL PROTECTED]
Subject: [Jmol-users] announcing Jmol handbook - in English
To: jmol-users@lists.sourceforge.net
Message-ID: [EMAIL PROTECTED]
Thank you =) ^^
So, you have a modified application jar that works and a modified applet
that does not? The Jmol.js is set for using the standard JmolApplet files,
I'm not sure if it will load yours properly. If your applet is in a single
jar file, try to use it in this way:
Hi Angel:
I try both the .cub file and .out file from GW03. Also downloaded .out file
from some database.
I would appreciate if you can send me a tested input file for JMOL to draw
MO, or point out to me where I can download them. I prefer Gaussian format.
Thanks
Xibin
Hi Xibin
I really have no experience with orbitals, but there is a set of test files
within Jmol project.
The URL is
http://jmol.svn.sourceforge.net/viewvc/jmol/trunk/Jmol-datafiles/
You can also download a copy for testing from Bob's pages demonstrating
the MO command:
Hello everyone!
I now am trying to display 3 proteins in a figures.
For example, I have 3 proteins, 1XBL.pdb, 1DKG.pdb, and 1DKX.pdb.
What I want to do is I want to display this 3 protein structures at same
time, and some residues are combinded together such that for 1XBL there are 5
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