fixed and, sure, why not...
getProperty pointGroupInfo
print getProperty(pointgroupInfo.principalAxis)
etc.
On Tue, Aug 19, 2008 at 11:17 PM, Dean Johnston [EMAIL PROTECTED]wrote:
Bob,
write pointgroup draw gives the following error (for 11.6.RC8):
Exception in thread QueueThread0
Dear Bob,
In Proteopedia.Org, Jaim Prilusky has implemented a popup button
under each Jmol that opens a new window containing only a Jmol. This
window can be made large and resized at will; resizing has been more
challenging to accomplish for Jmol within its Proteopedia structure
within
It's odd that the question about syncing with pop-up applet windows came up
today just as I noticed the following:
with the applet (version 11.6RC7) creating pop-up windows with the contents
of an applet in a web page works just fine, but when re-sizing that pop-up
window, the structure
Thomas Stout wrote:
It's odd that the question about syncing with pop-up applet windows came up
today just as I noticed the following:
with the applet (version 11.6RC7) creating pop-up windows with the contents
of an applet in a web page works just fine, but when re-sizing that pop-up
Hmmm - thanks Rolf.
It sounds like it would be best to avoid the end-user arbitrarily resizing
the popup window to make it larger/smaller My beta-test users are all
trying to make the popup window larger by dragging the browser window (or
using the maximize button in the upper right window
I'm having difficulty getting info from the Jmol applet. Here is my
code (basically copied from a post from Bob Hanson):
body
form
script type=text/javascript
jmolInitialize(jmol);
jmolApplet(500, load ../Jmol/jmol/models/1bf3.pdb);
var atomSet =
document
Jeff,
The mistake here is timing. You cannot query an applet while the page is
loading (prior to /body and completion of applet initialization). In some
cases this crashes browsers; in others it just causes an error; in others it
permanently disables the applet communication.
The simple fix is
ever? even if you don't manipulate the model? Please check for Java console
errors.
On Wed, Aug 20, 2008 at 12:29 PM, Thomas Stout [EMAIL PROTECTED]wrote:
It's odd that the question about syncing with pop-up applet windows came up
today just as I noticed the following:
with the applet
Yes, the display fails just on re-sizing the window (no model
manipulation). Without re-sizing the window, one can manipulate the model
and do anything one wishes with Jmol with complete stability.
Curiously, the popup window is more resistant to this blanking effect using
MS IExplorer than with
I've confirmed the out-of-memory issue. Adding -Xm256M into my Java
control panel (found this info on the Jmol wiki:
http://wiki.jmol.org/index.php/Jmol_Applet) seems to eliminate the
problem
BTW, does anyone know how to achieve this for a browser running on linux?
Cheers,
Tom
On Wed,
There's your answer. Out of memory. How big are these resizes? height/width?
I wonder if a settable maximumWindowSize option might be in order here.
Bob
On Wed, Aug 20, 2008 at 3:00 PM, Thomas Stout [EMAIL PROTECTED]wrote:
Exception in thread AWT-EventQueue-3 java.lang.OutOfMemoryError:
Yes: I've seen the users make the windows pretty big (especially when they
hit the maximize window button in the upper right of the browser window --
the window then becomes as large as the monitor some of those are in the
2000 pixels dimensions now). I'd be interested in two possible solutions:
On Wed, Aug 20, 2008 at 11:53 AM, Eric Martz [EMAIL PROTECTED]wrote:
Dear Bob,
In Proteopedia.Org, Jaim Prilusky has implemented a popup button
under each Jmol that opens a new window containing only a Jmol. This
window can be made large and resized at will; resizing has been more
Thanks Bob. That certainly works. So basically anytime I want to pull
out some info from the molecule file I need to do that in the
jmolApplet command. Or is there a way to do that prior to loading the
molecule into Jmol? I'm looking ahead to situations where I'll want
to dynamically
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