El 24 Sep 2008 a las 21:17, rob yang escribió:
Hmm, that does the trick. What if I want to animate only selected
models too?
I'm quite sure that there are options for choosing the frame range
involved in animation. Check the doc. But maybe not possible for non-
contiguous frames.
(following my previous post)
Rob,
You could also try to **delete** the unwanted frames (I think it's
done with a variant of ZAP) then play the animation
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Hi Vinu
El 25 Sep 2008 a las 12:31, vinu manikandan escribió:
I had mailed the Jmol users blog couple of times, may be i was not
clear in my question that's why ididn'tget any answers.
Maybe. Anyway, the list is so active that sometimes messages just
drop down too quickly. Don't hesitate to
Vinu manikandan wrote:
Sir I restructured the program in such away that the different values
are provided in the same page for example
1)1-55,
2)100- 120,
3)130-140 and
I want to select these regions in the Jmol with out loading the
protein structure again and again on the PDB Structure
also, you can add parameters like that as though they were callbacks:
jmolInitialize(./, JmolApplet.jar)
jmolSetCallback(draggable, true)
jmolApplet(400)
On Thu, Sep 25, 2008 at 3:31 AM, Angel Herraez [EMAIL PROTECTED] wrote:
Re: draggable applet
Here is a partial copy of my previous post (4
That sounds like a good explanation, but unfortunately I had the same
problem on both WinXP and linux I also cleared the FF cache on both
platforms (in addition to re-starting FF and also re-starting the computer
(WinXP). I may go back and try it again, but like I said, I'm happily
using the
ooh, yes, that's a neat option.
zap 1.2,1.4,1.6,1.8
etc.
Note that the original frame designations don't change. After this frame 1.3
is still frame 1.3. But if you try to go to frame 1.4, then you just get
all frames because frame 1.4 no longer exists.
Bob
On Thu, Sep 25, 2008 at 3:24 AM,
It's the Java cache.
On Thu, Sep 25, 2008 at 9:55 AM, Thomas Stout [EMAIL PROTECTED]wrote:
That sounds like a good explanation, but unfortunately I had the same
problem on both WinXP and linux I also cleared the FF cache on both
platforms (in addition to re-starting FF and also re-starting
Just found this (well, not me, Google of course):
Clearing Java cache on Linux, Mac, Windows:
http://www.uwplatt.edu/oit/howto/java-cache.html
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signed applet! :)
On Wed, Sep 24, 2008 at 10:05 PM, Jonathan Gutow [EMAIL PROTECTED] wrote:
Rob,
Even with this plugin there is a problem if you access files locally
on your computer. FF appears to pass absolute paths to files rather
than relative. This causes security errors when
Hi all,
So here's something new that's confusing me. I am loading a multi-structure
mol2 file. That's as simple as it gets, right? That's what I thought too till
safari spoke. In Firefox3, the molecule loads no problem. In safari, it
doesn't.. *unless* I put in an alert message right before
no kidding! What's firing the loadLigands() function? A button? A callback
(that could be the problem -- not good to run jmolScript from a callback on
some platforms, I think).
Try using
setTimeout(loadLigands(''),100)
in whatever call is doing that. I know the quotes are pain there. You
Dear Bob,
The following appears to me to be a bug in Jmol 11.6.RC12 that
prevents a cavity from being displayed from a state script. I have
not spent the time to test it in 11.6.RC16 because I doubt it has
been fixed there (but I stand ready to be corrected).
Go to
Oy. Thanks, Eric. Turns out there are a couple of issues here -- calculate
surfacedistance as well as set antialiasdisplay. ARGH. OK, I will get that
fixed. I don't think it has anything to do with the cavity business,
actually.
On Thu, Sep 25, 2008 at 12:43 PM, Eric Martz [EMAIL PROTECTED]wrote:
Hi all,
I am loading 2 separate files. The 1st file contains 1 structure, and the 2nd
file contains multi-models. In an animation, I'd like to keep the structure in
the 1st file constant in the background, while playing through the models in
the 2nd file. I am loading the 1st file first, then
Rob, the file.model is numeric.
So, if you do
load f1.pdb
load append f2.pdb
(or the same,
load files f1.pdb f2.pdb
)
then you need
set backgroundModel 1.1
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OK. That's fixed. Eric, if you want to try the fix right away, grab the
files from
* http://chemapps.stolaf.edu/jmol/docs/examples-11/Jmol-11_5.zip*
the version is 11.6.RC17_dev
Bob
On Thu, Sep 25, 2008 at 2:30 PM, Robert Hanson [EMAIL PROTECTED] wrote:
Oy. Thanks, Eric. Turns out there
please provide a Jmol state file and structure file that clearly
demonstrates this.
On Thu, Sep 25, 2008 at 3:24 PM, Victor Chest [EMAIL PROTECTED]wrote:
Hi all,
There is some problem with projection of bounded atoms of same type on
screen in version 11.6 RC16 (there is no this bug in
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