Thanks Robert,
but how to you retrieve it then programmatically? The instruction
Jmol.evaluate(jmolApplet, print {atomNo= + atomNo + }.label);
does not work.
Let me know.
Best,
Roberto
On Wed, Jan 15, 2014 at 6:58 AM, Robert Hanson hans...@stolaf.edu wrote:
atom properties are numbers,
On 01/15/2014 09:49 AM, Roberto Mosca wrote:
Thanks Robert,
but how to you retrieve it then programmatically? The instruction
Jmol.evaluate(jmolApplet, print {atomNo= + atomNo + }.label);
does not work.
I wasn't aware of it but it seems that you need
'script(your_jmol_script_commands)'
I would like to have a message “Working …” while Jmol is calculating and
rendering.
The following script displays the message only while rendering.
There’s no message while calculating. I’ve added some refresh commands just in
case, but same result.
Tried with different representations
On 01/15/2014 12:18 PM, Jaime Prilusky wrote:
I would like to have a message “Working …” while Jmol is calculating and
rendering.
The following script displays the message only while rendering.
There’s no message while calculating. I’ve added some refresh commands just
in case, but same
Hi Rolf,
that is great! It works for me to!! I wouldn't mind if they write it
somewhere in the wiki, though... (at least, I could not find even after a
thorough search).
Many thanks for your help, this really solved my issue!
Best,
Roberto
On Wed, Jan 15, 2014 at 11:24 AM, Rolf Huehne
Hello Roberto
that is great! It works for me to!! I wouldn't mind if they write it
somewhere in the wiki, though... (at least, I could not find even
after a thorough search).
YOU can write it in the Wiki, just sign up as user and edit whatever
page you feel is adequate. Maybe Recycling
Thank you for a prompt reply, but it’s not working for me on 14.0.5.
The command waitmessage is undocumented. Maybe it’s something you added?
On Jan 15, 2014, at 1:48 PM, Rolf Huehne rhue...@fli-leibniz.de wrote:
On 01/15/2014 12:18 PM, Jaime Prilusky wrote:
I would like to have a message
Please disregard previous mail. Your suggestion of using waitmessage works
perfect.
Thank you again,
Jaim
On Jan 15, 2014, at 3:06 PM, Jaime Prilusky jaime.prilu...@weizmann.ac.il
wrote:
Thank you for a prompt reply, but it’s not working for me on 14.0.5.
The command waitmessage is
On 01/15/2014 02:06 PM, Jaime Prilusky wrote:
Thank you for a prompt reply, but it’s not working for me on 14.0.5.
The command waitmessage is undocumented. Maybe it’s something you added?
Yes, its a Jena3D-specific addition to JSmol.min.js I made:
I just updated the 'Jena3D Viewer' to Jmol
You are almost there. drop the PRINT command part:
Jmol.evaluate(jmolApplet, {atomNo= + atomNo + }.label);
or
Jmol.evaluate(jmolApplet, @ + atomNo + .label);
Note that you can use label() or label(..some format stuff here...)
Bob
On Wed, Jan 15, 2014 at 3:49 AM, Roberto Mosca
I'm here in Kingston, Jamaica, with Robert Lancashire, who just upgraded to
Java 7u51. Here is the link to the specs:
http://www.oracle.com/technetwork/java/javase/7u51-relnotes-2085002.html
Primary importance is the security slider:
Changes to Security Slider:
The following changes to
echo and refresh will certainly work for this. But realize that there is no
updating it, because the calculation is not interruptable at all, including
updating any such message.
On Wed, Jan 15, 2014 at 6:18 AM, Jaime Prilusky
jaime.prilu...@weizmann.ac.il wrote:
I would like to have a
Dear All:
I am learning to use Jmol. I know labels could be used for each atom, but
it sometimes looks messy. A atom legend in right down corner (like in
Diamond) maybe better, so I am wondering there is any way to plot the atom
legend in Jmol?
Thanks,
kai
Hello Kai, and welcome to Jmol!
Your can put text in a corner using echo
When you say an atom legend, which atom are you thinking of? One or
several in the model? Will it change?
Something that will change, or a fixed constant legend?
example of a static legend, if that's what you want:
set echo e1 100% 5%;
echo Carbon;
color echo gray;
set echo e2 100% 10%;
echo Oxygen;
color echo red;
set echo e3 100% 15%;
echo Nitrogen;
color echo blue;
--
Yes, I have been working hard with the RSC to update all instances of old Java
on their journals site for our articles, and indeed
a) the old ones do not work
b) but Bob’s new signed one is fine!
On 15 Jan 2014, at 16:54, Robert Hanson hans...@stolaf.edu wrote:
I'm here in Kingston,
Thank you for the quick response.
I say legend means: one atom of each element was showed in legend. For
CaCO3, They are one Ca, one C and one O. For Copper Oxide, They are one Cu
and one O atom. In legend, I want not only the text, but also the colorful
atom spots, like the image I attached. Do
No, I don't think you can do that.
All atoms will rotate and zoom, so the legend atoms will not stay attached
to the corner.
All you can use in echos is text. You can also put an image as the echo, but
that will not change as you wish.
If you are doing this in a webpage, you could add a second
Dear Bob and List,
I've been trying to adapt Bob's vibrate.htm document to
1. read local Gaussian files (containing normal mode info) ;
2. Provide a drop-down menu of the normal modes.
Non-working page is found here:
www.neon22.com/jsmol/jsmol/jsmolvib700_e.htm
I think my problem is with the
We identified a problem with jmolGetPropertyAsArray today, and that may be
the problem. Please try the version at
http://chemapps.stolaf.edu/jmol/zip/jmol-14.1.6_2014.01.15.zip
___JmolVersion=14.1.6_dev_2014.01.15
bug fix: GETPROPERTY command and function can return SV.toString() rather
than
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