[Jmol-users] Jmol and Moodle

there. Thanks. * Jeff Hansen Department of Chemistry DePauw University Greencastle, IN 46135 [EMAIL PROTECTED] * - Using Tomcat but need to do more? Need to support web services

Re: [Jmol-users] Jmol and Moodle

. Be sure to try on a PC as well using Firefox. Bob Jeff Hansen wrote: My university is currently trying Moodle as an alternative to Blackboard for a Course Management System. One of the things I like about Moodle is that it supports Jmol. However, we have had some problems so far. I have

Re: [Jmol-users] Jmol and Moodle

it doesn't need my login while you weren't logged in when you tried it. * Jeff Hansen Department of Chemistry DePauw University Greencastle, IN 46135 [EMAIL PROTECTED

Re: [Jmol-users] Jmol-users Digest, Vol 9, Issue 18

Thanks for the response Angel. On Feb 18, 2007, at 11:51 PM, jmol-users- [EMAIL PROTECTED] wrote: Date: Fri, 16 Feb 2007 19:44:44 +0100 From: Angel Herraez [EMAIL PROTECTED] Subject: Re: [Jmol-users] Moodle and Jmol again To: jmol-users@lists.sourceforge.net Message-ID: [EMAIL PROTECTED]

[Jmol-users] Weird problem with Jmol

Any help you can provide would be appreciated. Thanks. Jeff * Jeff Hansen Department of Chemistry DePauw University Greencastle, IN 46135 [EMAIL PROTECTED

[Jmol-users] Student Jmol pages

are at: http://people.depauw.edu/jhansen/Presentations/ * Jeff Hansen Department of Chemistry DePauw University Greencastle, IN 46135 [EMAIL PROTECTED] * - This SF.net

[Jmol-users] getting info from Jmol applet

can give. *** Jeff Hansen Department of Chemistry and Biochemistry DePauw University 602 S. College Ave. Greencastle, IN 46135 [EMAIL PROTECTED

Re: [Jmol-users] Jmol-users Digest, Vol 27, Issue 24

. *** Jeff Hansen Department of Chemistry and Biochemistry DePauw University 602 S. College Ave. Greencastle, IN 46135 [EMAIL PROTECTED] *** On Aug 20, 2008, at 3:43 PM, [EMAIL PROTECTED] wrote: Message: 4 Date: Wed, 20 Aug 2008 14:42:00 -0500 From: Robert

[Jmol-users] A little more javascript help please?

it. *** Jeff Hansen Department of Chemistry and Biochemistry DePauw University 602 S. College Ave. Greencastle, IN 46135 [EMAIL PROTECTED] *** - This SF.Net

[Jmol-users] A little javascript help please? again

input type=button onclick=appletReady() value=load /form /body /html *** Jeff Hansen Department of Chemistry and Biochemistry DePauw University 602 S. College Ave. Greencastle, IN 46135 [EMAIL PROTECTED

Re: [Jmol-users] Jmol-users Digest, Vol 27, Issue 32

(atomSetArray[0].info); } /script *** Jeff Hansen Department of Chemistry and Biochemistry DePauw University 602 S. College Ave. Greencastle, IN 46135 [EMAIL PROTECTED] *** On Aug 23, 2008, at 11:47 AM

Re: [Jmol-users] Jmol-users Digest, getting data from Jmol

(my favorite), and jmolGetPropertyAsArray() or jmolGetPropertyAsString() *** Jeff Hansen Department of Chemistry and Biochemistry DePauw University 602 S. College Ave. Greencastle, IN 46135 [EMAIL PROTECTED

Re: [Jmol-users] Jmol-users Digest, getting data from Jmol

, but I'm having trouble figuring out how to do that. *** Jeff Hansen Department of Chemistry and Biochemistry DePauw University 602 S. College Ave. Greencastle, IN 46135 [EMAIL PROTECTED] *** On Aug 26, 2008

Re: [Jmol-users] Jmol-users Digest, getting data from Jmol

Thanks Paul. That is very helpful. I was able to use it to display the data in the array in a text area on the web page. Should prove useful for figuring out how to mine the data. *** Jeff Hansen Department of Chemistry and Biochemistry DePauw

[Jmol-users] problem in firefox

'/textarea/p /form /div The page is at http://web.mac.com/jhansen4/Jmol/NewJmolDiv.html if that will help. *** Jeff Hansen Department of Chemistry and Biochemistry DePauw University 602 S. College Ave. Greencastle, IN 46135 [EMAIL PROTECTED

Re: [Jmol-users] problem in firefox

div instead. Jeff *** Jeff Hansen Department of Chemistry and Biochemistry DePauw University 602 S. College Ave. Greencastle, IN 46135 [EMAIL PROTECTED] *** On Aug 27, 2008, at 11:19 AM, Dean Johnston wrote

Re: [Jmol-users] problem in firefox

. *** Jeff Hansen Department of Chemistry and Biochemistry DePauw University 602 S. College Ave. Greencastle, IN 46135 [EMAIL PROTECTED] *** On Aug 27, 2008, at 11:57 AM, Robert Hanson wrote: Right -- name attribute

Re: [Jmol-users] problem in firefox

constructor to change jmol parameters and such. Obviously there are other ways to do that, but this just seems an attractive way to me for some reason. *** Jeff Hansen Department of Chemistry and Biochemistry DePauw University 602 S. College Ave

Re: [Jmol-users] problem in firefox

Sorry I wasn't clear about this, but the applet corresponding to result1 is loaded when the page loads. I'll try jmolScriptWait to see if that does anything for the result2. f *** Jeff Hansen Department of Chemistry and Biochemistry DePauw

Re: [Jmol-users] problem in firefox

Thanks. New it had to be something simple like that. For some reason I needed the \ earlier and it was still there. *** Jeff Hansen Department of Chemistry and Biochemistry DePauw University 602 S. College Ave. Greencastle, IN 46135 [EMAIL

Re: [Jmol-users] problem in firefox

*** Jeff Hansen Department of Chemistry and Biochemistry DePauw University 602 S. College Ave. Greencastle, IN 46135 [EMAIL PROTECTED] *** On Aug 28, 2008, at 10:47 PM, Robert Hanson wrote: Jeff, why don't you come over to St. Olaf

Re: [Jmol-users] problem in firefox

today. Changes come too fast for me to keep up with, which is a good thing. *** Jeff Hansen Department of Chemistry and Biochemistry DePauw University 602 S. College Ave. Greencastle, IN 46135 [EMAIL PROTECTED

[Jmol-users] which jmol applet?

node = document.createTextNode(text); _jmolText.appendChild(node); } and I have more than one Jmol applet on the page, how do I select which applet I'm getting the info from? *** Jeff Hansen Department of Chemistry

Re: [Jmol-users] Bond picking -- and getProperty in general

)') *** Jeff Hansen Department of Chemistry and Biochemistry DePauw University 602 S. College Ave. Greencastle, IN 46135 [EMAIL PROTECTED] *** On Aug 30, 2008, at 11:45 PM, Robert Hanson wrote: getProperty can be a very inefficient function

Re: [Jmol-users] javascript command fails in Safari?

I don't know about from the console, but I've used it successfully in a web page on Safari. *** Jeff Hansen Department of Chemistry and Biochemistry DePauw University 602 S. College Ave. Greencastle, IN 46135 [EMAIL PROTECTED

[Jmol-users] problem reading spardir file

in Jmol? What I'm looking to see is a file loaded that has multiple models so I can see each conformer. Thanks for any help you can provide. *** Jeff Hansen Department of Chemistry and Biochemistry DePauw University 602 S. College Ave. Greencastle

Re: [Jmol-users] problem reading spardir file

://www.chemtube3d.com Tel: +44 (0)151-794-3506 (3500 secretary) Message: 5 Date: Thu, 2 Oct 2008 16:13:42 -0400 From: Jeff Hansen [EMAIL PROTECTED] Subject: [Jmol-users] problem reading spardir file To: jmol-users@lists.sourceforge.net Message-ID: [EMAIL PROTECTED] Content-Type: text/plain; charset

Re: [Jmol-users] Jmol 11.6 release -- delayed

attempt to open any other file type. The Save File button allowed me to save a file as a pdb which I could then open. *** Jeff Hansen Department of Chemistry and Biochemistry DePauw University 602 S. College Ave. Greencastle, IN 46135 [EMAIL PROTECTED

[Jmol-users] odd behavior

, for example, that loads with multiple models just fine. pdb files load ok too. Doing this with 11.6 which I just downloaded tonight. So what is going on here? *** Jeff Hansen Department of Chemistry and Biochemistry DePauw University 602 S. College Ave

Re: [Jmol-users] odd behavior

for sure is that it didn't work with out the eval(). Probably because of the this.loadString syntax. Thanks for the suggestion. Much cleaner. *** Jeff Hansen Department of Chemistry and Biochemistry DePauw University 602 S. College Ave. Greencastle

Re: [Jmol-users] odd behavior

Never mind about this. I found my problem. *** Jeff Hansen Department of Chemistry and Biochemistry DePauw University 602 S. College Ave. Greencastle, IN 46135 [EMAIL PROTECTED] *** On Oct 16, 2008, at 10

[Jmol-users] File type

How can I use Jmol to determine a file's type and assign it to a variable? *** Jeff Hansen Department of Chemistry and Biochemistry DePauw University 602 S. College Ave. Greencastle, IN 46135 [EMAIL PROTECTED

[Jmol-users] Finding energy of different models in a file

energy for each model in the file. My code says which Jmol applet to get it from, but how do I tell it which model of that file to get the energy of? *** Jeff Hansen Department of Chemistry and Biochemistry DePauw University 602 S. College Ave

Re: [Jmol-users] Finding energy of different models in a file

/jmol/ Models/n-butane.xyz So I have two questions. First, how to get the heat of formation number out. Second, how to tell the applet which model to get the energy of. *** Jeff Hansen Department of Chemistry and Biochemistry DePauw University

Re: [Jmol-users] Finding energy of different models in a file

One more thing... Could I do something like a Jmol script that somehow pulls out the heats of formation, puts them into an array, then returns that array or is this something that I can do in Javascript? *** Jeff Hansen Department of Chemistry

Re: [Jmol-users] Finding energy of different models in a file

. *** Jeff Hansen Department of Chemistry and Biochemistry DePauw University 602 S. College Ave. Greencastle, IN 46135 [EMAIL PROTECTED] *** On Oct 22, 2008, at 4:40 PM, Robert Hanson wrote: // var Energy

Re: [Jmol-users] Finding energy of different models in a file

the backslash. Much easier. I'll remember both of those ideas in the future. Working great now. *** Jeff Hansen Department of Chemistry and Biochemistry DePauw University 602 S. College Ave. Greencastle, IN 46135 [EMAIL PROTECTED

Re: [Jmol-users] documentation code revised

. The applet height was not right. For some reason it it was maybe 30 or 40 pixels high instead of filling the table cell. *** Jeff Hansen Department of Chemistry and Biochemistry DePauw University 602 S. College Ave. Greencastle, IN 46135 [EMAIL

Re: [Jmol-users] Use of Java in teaching?

of attention to what comes out of Cupertino. *** Jeff Hansen Department of Chemistry and Biochemistry DePauw University 602 S. College Ave. Greencastle, IN 46135 jhan...@depauw.edu *** On Mar 3, 2009, at 7

Re: [Jmol-users] Use of Java in teaching?

not everyone is using Flash, certainly not exclusively, and plenty of people find Java to be sufficiently safe and not outmoded. *** Jeff Hansen Department of Chemistry and Biochemistry DePauw University 602 S. College Ave. Greencastle, IN 46135 jhan

Re: [Jmol-users] Applet button to display model name on screen

, divInc is an id for the particular jmol applet (out of more than one on the page) Perhaps you can adapt this for your purposes. Let me know if you have any questions about it. *** Jeff Hansen Department of Chemistry and Biochemistry DePauw University

Re: [Jmol-users] carbohydrate structures

this on a PowerBook G4 running OS X 10.5.6 and Spartan 4 beta. Jeff *** Jeff Hansen Department of Chemistry and Biochemistry DePauw University 602 S. College Ave. Greencastle, IN 46135 jhan...@depauw.edu *** On Apr 17

Re: [Jmol-users] carbohydrate structures

I should really learn to read. Just made sense to me that 1,2- dichloroethane would be a structure for which you would want to see a Fischer Projection. *** Jeff Hansen Department of Chemistry and Biochemistry DePauw University 602 S. College Ave

Re: [Jmol-users] jmol freezes

whatever is causing the problem. *** Jeff Hansen Department of Chemistry and Biochemistry DePauw University 602 S. College Ave. Greencastle, IN 46135 jhan...@depauw.edu *** On Apr 23, 2009, at 6:12 PM

Re: [Jmol-users] Jmol jQuery

containing the structure is loaded into it. Might that be helpful? http://web.me.com/jhansen4/iWeb/Jmol/NewJmolDiv.html *** Jeff Hansen Department of Chemistry and Biochemistry DePauw University 602 S. College Ave. Greencastle, IN 46135 jhan

[Jmol-users] Jmol and xhtml

how I might get around this would be appreciated. *** Jeff Hansen Department of Chemistry and Biochemistry DePauw University 602 S. College Ave. Greencastle, IN 46135 jhan...@depauw.edu

Re: [Jmol-users] Jmol and xhtml

will be required is maybe a rewrite of jmol.js that uses some DOM based alternative to document.write. Sounds like a challenge. Should be a good learning experience. *** Jeff Hansen Department of Chemistry and Biochemistry DePauw University 602 S. College Ave

Re: [Jmol-users] Jmol and xhtml

would prefer to use jmol.js but if necessary can do without it. Jeff *** Jeff Hansen Department of Chemistry and Biochemistry DePauw University 602 S. College Ave. Greencastle, IN 46135 jhan...@depauw.edu

Re: [Jmol-users] Jmol and xhtml

errors. *** Jeff Hansen Department of Chemistry and Biochemistry DePauw University 602 S. College Ave. Greencastle, IN 46135 jhan...@depauw.edu *** On May 6, 2009, at 9:36 PM, Angel Herráez wrote: OK, I

Re: [Jmol-users] Jmol and xhtml

of your revised Jmol.js and begin using that. Thanks! Jeff *** Jeff Hansen Department of Chemistry and Biochemistry DePauw University 602 S. College Ave. Greencastle, IN 46135 jhan...@depauw.edu *** On May

Re: [Jmol-users] Jmol and xhtml

not work there as its implementation of SVG is poor to non-existent. I don't see a way around that and frankly standards are there for a reason so as long as my code is standards compliant I'll be ok with that. *** Jeff Hansen Department

Re: [Jmol-users] Jmol and xhtml

not sure why, but since it seems to be necessary I did it. Jeff *** Jeff Hansen Department of Chemistry and Biochemistry DePauw University 602 S. College Ave. Greencastle, IN 46135 jhan...@depauw.edu *** On May

Re: [Jmol-users] Jmol and xhtml

affect html pages. I can't currently test IE8. My understanding is that the svg would require a plug-in from adobe. Not sure about xhtml. *** Jeff Hansen Department of Chemistry and Biochemistry DePauw University 602 S. College Ave. Greencastle, IN 46135

Re: [Jmol-users] Jmol and xhtml

as a problem? *** Jeff Hansen Department of Chemistry and Biochemistry DePauw University 602 S. College Ave. Greencastle, IN 46135 jhan...@depauw.edu *** On May 7, 2009, at 12:01 AM, Robert Hanson wrote

Re: [Jmol-users] Jmol and xhtml

. *** Jeff Hansen Department of Chemistry and Biochemistry DePauw University 602 S. College Ave. Greencastle, IN 46135 jhan...@depauw.edu *** On May 7, 2009, at 8:59 AM, Jonathan Gutow wrote: I believe this is simply due

Re: [Jmol-users] Jmol and xhtml

Yes. It does the same thing on your page. I think you are right that it is not likely to work with MSIE. *** Jeff Hansen Department of Chemistry and Biochemistry DePauw University 602 S. College Ave. Greencastle, IN 46135 jhan...@depauw.edu

Re: [Jmol-users] Jmol and xhtml

I don't think that is it. I don't see a checked or selected anywhere in relation to the offending function. *** Jeff Hansen Department of Chemistry and Biochemistry DePauw University 602 S. College Ave. Greencastle, IN 46135 jhan...@depauw.edu

Re: [Jmol-users] Jmol and xhtml

) I still get the same error. The following http://simonwillison.net/2003/Jun/15/javascriptWithXML/ has a discussion of the issue and a general solution although, as I said above, it doesn't seem to be working for me. *** Jeff Hansen Department

Re: [Jmol-users] Jmol and xhtml

I tried this version of Jmol.js. First I renamed it to Jmol2.js just to make sure it loaded the right one. I'm still getting the same error. I think it is from the document.createElement *** Jeff Hansen Department of Chemistry and Biochemistry

Re: [Jmol-users] Jmol and xhtml

)) *** Jeff Hansen Department of Chemistry and Biochemistry DePauw University 602 S. College Ave. Greencastle, IN 46135 jhan...@depauw.edu *** On May 7, 2009, at 12:48 PM, Robert Hanson wrote: Jeff, now if you are going

Re: [Jmol-users] Jmol and xhtml

to do this is to learn something new. My guess is that in the end I'll develop parallel solutions, one with Divgraph and one with svg. I might even do a third using the canvas object - haven't decided yet. Thanks for the help. *** Jeff Hansen

Re: [Jmol-users] Jmol and xhtml

Yes. From a website. Same error with your page. *** Jeff Hansen Department of Chemistry and Biochemistry DePauw University 602 S. College Ave. Greencastle, IN 46135 jhan...@depauw.edu *** On May 7, 2009

Re: [Jmol-users] Jmol and xhtml

. Is this the intended behavior? *** Jeff Hansen Department of Chemistry and Biochemistry DePauw University 602 S. College Ave. Greencastle, IN 46135 jhan...@depauw.edu *** On May 8, 2009, at 12:52 AM, Robert Hanson

Re: [Jmol-users] Jmol and graphing

of the summer too. *** Jeff Hansen Department of Chemistry and Biochemistry DePauw University 602 S. College Ave. Greencastle, IN 46135 jhan...@depauw.edu *** On May 8, 2009, at 8:19 AM, Robert Hanson wrote: Jeff

Re: [Jmol-users] Jmol and graphing

overkill since its just for looks. I've thought about trying to do it somehow with bezier curves. Any suggestions? *** Jeff Hansen Department of Chemistry and Biochemistry DePauw University 602 S. College Ave. Greencastle, IN 46135 jhan...@depauw.edu

[Jmol-users] plotting energies using svg

this and/or how to fix it I would appreciate hearing it. *** Jeff Hansen Department of Chemistry and Biochemistry DePauw University 602 S. College Ave. Greencastle, IN 46135 jhan...@depauw.edu

[Jmol-users] Energies in SVG

someone point me in the direction of how to make changes in the applet trigger an event? http://web.me.com/jhansen4/iWeb/Jmol/JmolPlusSVG.xhtml *** Jeff Hansen Department of Chemistry and Biochemistry DePauw University 602 S. College Ave. Greencastle

Re: [Jmol-users] Energies in SVG

Great. Will do. Thanks. *** Jeff Hansen Department of Chemistry and Biochemistry DePauw University 602 S. College Ave. Greencastle, IN 46135 jhan...@depauw.edu *** On May 19, 2009, at 4:12 AM, Angel

[Jmol-users] svg energy graph

the corresponding point in the graph. Still need axes and some other niceties but I'm pretty sure the code to do that is out there somewhere so I'll put that in next week. http://web.me.com/jhansen4/iWeb/Jmol/JmolPlusSVG.xhtml *** Jeff Hansen Department

[Jmol-users] Help with Jmol and jQuery?

not. *** Jeff Hansen Department of Chemistry and Biochemistry DePauw University 602 S. College Ave. Greencastle, IN 46135 jhan...@depauw.edu

Re: [Jmol-users] Help with Jmol and jQuery?

an onclick=circle_click(evt) within the tag for the circle element in the svg. *** Jeff Hansen Department of Chemistry and Biochemistry DePauw University 602 S. College Ave. Greencastle, IN 46135 jhan...@depauw.edu

[Jmol-users] Jmol SVG energy graph

any help anyone could provide to take this further. *** Jeff Hansen Department of Chemistry and Biochemistry DePauw University 602 S. College Ave. Greencastle, IN 46135 jhan...@depauw.edu

Re: [Jmol-users] chemdraw/Jmol noon: Tetrahedral carbons appear flat

. *** Jeff Hansen Department of Chemistry and Biochemistry DePauw University 602 S. College Ave. Greencastle, IN 46135 jhan...@depauw.edu *** On Jun 4, 2009, at 1:22 PM, Angel Herráez wrote: Hello nmckenna As far

Re: [Jmol-users] JMOL and Wikipedia

be a better solution than a new window. Hope this helps. Jeff *** Jeff Hansen Department of Chemistry and Biochemistry DePauw University 602 S. College Ave. Greencastle, IN 46135 jhan...@depauw.edu

Re: [Jmol-users] Slowdown by atoms outside viewport

It may be that there is a problem, but I don't see it on my computer which is a MacBook Pro running OS X 10.5.8 and using Safari 4.0.3. The animation runs smoothly throughout. *** Jeff Hansen Department of Chemistry and Biochemistry DePauw

[Jmol-users] mapping electrostatic potential

be desirable or is this something better left not done? Jeff *** Jeff Hansen Department of Chemistry and Biochemistry DePauw University 602 S. College Ave. Greencastle, IN 46135 jhan...@depauw.edu

Re: [Jmol-users] mapping electrostatic potential

a single value of 0.06260959. Any ideas what I'm doing wrong here? *** Jeff Hansen Department of Chemistry and Biochemistry DePauw University 602 S. College Ave. Greencastle, IN 46135 jhan...@depauw.edu

[Jmol-users] file formats

Is there somewhere I can see what file types Jmol can read and what the format of each of those file types is? *** Jeff Hansen Department of Chemistry and Biochemistry DePauw University 602 S. College Ave. Greencastle, IN 46135 jhan...@depauw.edu

Re: [Jmol-users] Remove Jmol Watermark

- just a slightly different color or lighter shade - would lead people to think it was a menu, which it is. Jeff *** Jeff Hansen Department of Chemistry and Biochemistry DePauw University 602 S. College Ave. Greencastle, IN 46135 jhan...@depauw.edu

Re: [Jmol-users] Remove Jmol Watermark

but then it wouldn't be so obvious that it is a menu. Like I said, I haven't seen David's suggestion. It might work fine. I do think having it in the top left is more likely to trigger one to think it is a menu. *** Jeff Hansen Department

Re: [Jmol-users] Remove Jmol Watermark

there. Some mouse-over prompt as Bob suggested would be good in addition to that. Jeff *** Jeff Hansen Department of Chemistry and Biochemistry DePauw University 602 S. College Ave. Greencastle, IN 46135 jhan...@depauw.edu

Re: [Jmol-users] Remove Jmol Watermark

of consistency and over time things will seem more intuitive. *** Jeff Hansen Department of Chemistry and Biochemistry DePauw University 602 S. College Ave. Greencastle, IN 46135 jhan...@depauw.edu *** On Oct

Re: [Jmol-users] Remove Jmol Watermark

On Oct 20, 2009, at 12:08 PM, Robert Hanson wrote: And about the Mac interface, there's lots of help to get started either with the system help or with online tutorials. Once you get started I think you'll find lots of consistency and over time things will seem more intuitive. The

Re: [Jmol-users] feedback appreciated

we want to adjust? Kind of a built in slider. *** Jeff Hansen Department of Chemistry and Biochemistry DePauw University 602 S. College Ave. Greencastle, IN 46135 jhan...@depauw.edu *** On Nov 18, 2009

Re: [Jmol-users] NWChem output produces pink balls

I've seen this before too - I believe in .mol files output from Spartan. *** Jeff Hansen Department of Chemistry and Biochemistry DePauw University 602 S. College Ave. Greencastle, IN 46135 jhan...@depauw.edu

Re: [Jmol-users] what is Jmol for?

. Starting a new SourceForge project would not preclude continuing to use it in Jmol. Jeff *** Jeff Hansen Department of Chemistry and Biochemistry DePauw University 602 S. College Ave. Greencastle, IN 46135 jhan...@depauw.edu

Re: [Jmol-users] what is Jmol for?

retrieved. *** Jeff Hansen Department of Chemistry and Biochemistry DePauw University 602 S. College Ave. Greencastle, IN 46135 jhan...@depauw.edu *** On Dec 16, 2009, at 5:35 PM, rgb wrote: It detracts from

Re: [Jmol-users] GUI javascript color picker widget for Jmol, please look at and vote on inclusion in Jmol.js...

Very nice! *** Jeff Hansen Department of Chemistry and Biochemistry DePauw University 602 S. College Ave. Greencastle, IN 46135 jhan...@depauw.edu *** On Jan 2, 2010, at 4:35 PM, Jonathan Gutow wrote

Re: [Jmol-users] Requesting opinions on how organization for Jmol JavaScript Widgets Package...

make it that much more useful. *** Jeff Hansen Department of Chemistry and Biochemistry DePauw University 602 S. College Ave. Greencastle, IN 46135 jhan...@depauw.edu *** On Jan 9, 2010, at 4:57 PM

Re: [Jmol-users] Jmol usually not displaying molecule

. The molecule was strange in that it was completely flat with several atoms overlapping. I don't know if that is how the structure should be, but it looked very odd. Hope this helps. *** Jeff Hansen Department of Chemistry and Biochemistry DePauw University 602

Re: [Jmol-users] Jmol usually not displaying molecule

Forgot to mention this was with Safari 4.0.4. Pretty much the same behavior in Firefox 3.5.6. *** Jeff Hansen Department of Chemistry and Biochemistry DePauw University 602 S. College Ave. Greencastle, IN 46135 jhan...@depauw.edu

Re: [Jmol-users] RFC - proposal for hetero subentries in popup menu

How about selecting aromatic rings or different functional groups? *** Jeff Hansen Department of Chemistry and Biochemistry DePauw University 602 S. College Ave. Greencastle, IN 46135 jhan...@depauw.edu

Re: [Jmol-users] Prevent applet resizing with browser zoom?

If the applet were within a div of defined size would the size of the div stay the same and thereby keep the applet the same size? Don't know but thought maybe this could be a solution? *** Jeff Hansen Department of Chemistry and Biochemistry DePauw

Re: [Jmol-users] Appending frames to a trajectory

believe would all be done outside of Jmol using javascript (to rewrite the trajectory file) then tell Jmol to reload the trajectory file. Is that what you need? *** Jeff Hansen Department of Chemistry and Biochemistry DePauw University 602 S. College

Re: [Jmol-users] Drag and drop into signed applet

All three of the links on that page worked for me on Mac OS X 10.6.3 and Safari 4.0.4. However, when I tried to drag a pdb file from a Finder window, I got a FileNotFoundException. *** Jeff Hansen Department of Chemistry and Biochemistry DePauw

Re: [Jmol-users] Drag and drop into signed applet

the other? By simple I mean with mouse actions. I know it could be done via the console. *** Jeff Hansen Department of Chemistry and Biochemistry DePauw University 602 S. College Ave. Greencastle, IN 46135 jhan...@depauw.edu

Re: [Jmol-users] Drag and drop into signed applet

All worked fine for me, including drag and drop of multiple files from multiple folders in Finder. On Firefox 3.6 and OS X 10.6.3. *** Jeff Hansen Department of Chemistry and Biochemistry DePauw University 602 S. College Ave. Greencastle, IN 46135

Re: [Jmol-users] Want some opinions on rotation about bond before posting a feature request...

How about hovering over the bond instead of atoms, or at least a single click on the bond instead of having to click two atoms. *** Jeff Hansen Department of Chemistry and Biochemistry DePauw University 602 S. College Ave. Greencastle, IN 46135 jhan

Re: [Jmol-users] Want some opinions on rotation about bond before posting a feature request...

and two-finger scrolling? Even outside of using a MacBook Pro, I'm sure not everyone uses a scroll wheel. Jeff *** Jeff Hansen Department of Chemistry and Biochemistry DePauw University 602 S. College Ave. Greencastle, IN 46135 jhan...@depauw.edu

Re: [Jmol-users] Want some opinions on rotation about bond before posting a feature request...

Still does not work with a trackpad. *** Jeff Hansen Department of Chemistry and Biochemistry DePauw University 602 S. College Ave. Greencastle, IN 46135 jhan...@depauw.edu *** On Apr 15, 2010, at 8:19 AM

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