[Jmol-users] Fwd: installing JSmol extension

The page http://dipc.ehu.es/bondslam/index.php/Hypervalence produces the error [Java2Script] The required class file /bondslam/extensions/jsmol/j2s/J/jvxl/readers/UNKNOWNReader.js could not be loaded. Script error: Unexpected token '<‘ arising from the presence of the (partial) WordPress

Re: [Jmol-users] installing JSmol extension

Dear Angel, Please see below what I wrote Henry. Somehow JSmol sometimes fails reading the JVXL file. From the existing files in jsmol/j2s/J/jvxl/readers/, I guess that the software finds out the format of the file to read, and call the matching reader. i.e PolygonFileReader.js for PoligonFile

Re: [Jmol-users] Fwd: installing JSmol extension

Hi Henry! To me it sounds like some js library incompatibility (edit mode vs. view mode). The UNKNOWNReader part sound very suspicious. What happens if, from the non-working page, you open JSmol console and paste the command to load the isosurface?   

Re: [Jmol-users] Fwd: installing JSmol extension

Bob, The path is http://dipc.ehu.es/bondslam/images/b/b4/CH3F_mo10.cub.jvxl which is the path in the script, with lower case i for images http://dipc.ehu.es/bondslam/Images/b/b4/CH3F_mo10.cub.jvxl has an upper case I for Images and the file system is case sensitive. Henry Rzepa,

Re: [Jmol-users] Fwd: installing JSmol extension

http://dipc.ehu.es/bondslam/index.php/Images/b/b4/CH3F_mo10.cub.jvxl does not exist. ​ -- Check out the vibrant tech community on one of the world's most engaging tech sites, Slashdot.org!

Re: [Jmol-users] Fwd: installing JSmol extension

I've just visited (first time) http://dipc.ehu.es/bondslam/index.php/Hypervalence and I can see both molecule and surface So either you just fixed it or there is some caching problem --- El software de antivirus Avast ha analizado este correo electrónico en busca de virus.

Re: [Jmol-users] Fwd: installing JSmol extension

right - well, you need to fix that on your page, Henry. Right now you have what I showed there. ​ -- Check out the vibrant tech community on one of the world's most engaging tech sites, Slashdot.org!

Re: [Jmol-users] installing JSmol extension

I did just copy that link from my developer console report. The way you had that: http://dipc.ehu.es/bondslam/index.php/Hypervalence for the page and then images/b/b4/CH3F_mo10.cub.jvxl for the object meant that the browser put

[Jmol-users] Spartan Files

Bob et al, It's been a while since I used spartan, but in the past you had to go through a process of "applying" the partial charges to actually create an atom/charge table in the spartan file. Recently, I received a spartan file from a user that had all the 3 spartan charges types and charges,

Re: [Jmol-users] installing JSmol extension

Yes. And the surface looks great. Note: if you want to avoid the simplified rendering of the surface while rotating the model, you may add 8 to the block. This sets platformSpeed as defined at https://chemapps.stolaf.edu/jmol/docs/#set_platformspeed Jaim > On 25 Jul 2017, at 20:23, Angel

Re: [Jmol-users] Spartan Files

Thanks Jennifer. I’ve been doing some reading at the WaveFunction site. It looks like the App’s Spartan Properties Database subset is 6000 molecules. If the sketcher is used properly, you can pack the following into the saved (emailed - go figure) spartan file: 1) The three basic charges in a

Re: [Jmol-users] Spartan Files

iSpartan doesn't do any calculations. It looks up data somewhere and only works for the 50k included molecules. I'm not sure if all the data is included in the app or maybe it looks up stuff online. I am not familiar with the file formats Spartan is using these days. Jennifer Sent from my