Re: [Jmol-users] connecting atoms in two different models of a pdb file

2015-09-25 Thread Hoelzer, Mark
Margaret, Could you try something like "select atomno=XXX and model=1" to get the specific atom in just one of the biological units? I think I remember being able to select just one of the models in an assembly using that "model=" command. I'm not by my CPU right now or I'd try it myself -

Re: [Jmol-users] Jmol 14.4.4_2016.03.21

2016-03-21 Thread Hoelzer, Mark
Hmm - I've also been seeing this same error for a number of our pages over the past week or two (for example, see the email below that I just received from a teacher). It looks like if I host the PDB file on our site, it loads just fine. But if I try to use the "load=" command to grab it

[Jmol-users] Thickness to double bond and single bonds

2016-10-11 Thread Hoelzer, Mark
Morning Jmol users, I'm wondering if there is a way to set the wireframe thickness of all single bonds in a small molecule to one thickness, and all double bonds to a different thickness. I anticipate this may not be possible, since most atoms that connect with a double bond will also have