Hello,
I used progressive mauve to align 32 genomes, which produced a guide tree file.
When I opened this file in Geneious the labels on the tree are not my original
sequence labels. The new labels just say seq 1, seq 2, seq 3, etc up to seq
32. I was wondering if there is a way to
As far as I know there is no way to have the file/sample names appended to
the guide tree. The sequence order is the order in which the files were
added in the alignment setup. I've been manually changing the seq names in
the guide tree file. If there is another way of doing it I'd love to hear
The vagueness in that file is at least partially intentional -- the tree
doesn't have a well-established interpretation outside of being a
reflection of the order in which genomes were aligned. I think it would
be dangerous to interpret it as a phylogeny, especially as one intended
to represent
Thank you for all of your helpful responses. I guess at this point my question
changes. I would like to build a phylogenetic tree of this alignment and I
assume I need to convert the XMFA file to another format to complete this task.
Has anyone had experience with file conversion and what
Hi Susan,
On Tue, 2015-12-08 at 20:05 +, Susan Beth Fogelson wrote:
> Thank you for all of your helpful responses. I guess at this point my
> question changes. I would like to build a phylogenetic tree of this
> alignment and I assume I need to convert the XMFA file to another
> format to
