n tpsUtil can be a great
solution if it's appropriate to your data.
Best,
Carmelo
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A complete set of R functions for all of this is available upon request.
All the best
Paolo
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hanks in advance,
>>> Avi
>>>
>>>
>>> On Wednesday, February 28, 2018 at 7:38:22 PM UTC+2, Avi Koplovich wrote:
>>>>
>>>> Hi,
>>>> I've started a new project and came to the point of marking fixed and
>>>> semi lan
ng the landmarks 1, 20 and 48 as fixed landmarks, and all the
>>> rest are semi landmarks. I'm not sure of using 20 and 48 as fixed
>>> landmarks, and I wonder if I can use landmark 40 as fixed landmark since it
>>> is restricted by both x (side line) and y (dorsal connecti
it easier to select vertices in R? Also, I realize that it the documentation
> for geomorph uses a mesh with less than 30,000 vertices, but I lose most of
> the useful information when I drop below 120k.
>
>
> Any help would be greatly appreciated,
>
>
> Skip
Have you tried using
mark since it is restricted
>> by both x (side line) and y (dorsal connection of the tail fin). Can/Should
>> I use the eye as a fixed landmark for the head (i.e. can it interfere with
>> interpreting the head contour)?
>> Here is an example to show what I mean:
>> https://drive.
the head contour)?
> Here is an example to show what I mean:
>
> https://drive.google.com/file/d/1iO7lCN3ZCtV7DF9vsczkb_EYoSli1Orr/view?usp=sharing
>
> I'll be happy if you can advise on that.
> Thank you,
> Avi
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MORPHMET may be accessed via its webpage at http://www.mo
io exports the models as .scn
> files, but I'm having trouble importing them into Geomagic to fuse. Does
> anyone have any suggestions to how I can do this?
>
> --
> MORPHMET may be accessed via its webpage at http://www.morphometrics.org
> ---
> You received this message becau
like
Geomagic has much more capabilities. ScanStudio exports the models as .scn
files, but I'm having trouble importing them into Geomagic to fuse. Does anyone
have any suggestions to how I can do this?
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Soledad De Esteban-Trivigno
Institut Català de Paleontologia Miquel Crusafont (ICP)
Campus de la Universitat Autònoma de Barcelona
Cerdanyola del Vallès (Barcelona). Spain
www.icp.cat
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opology
Stony Brook University
-Original Message-
From: Avi Koplovich [mailto:netbird@gmail.com ]
Sent: Tuesday, February 27, 2018 3:09 AM
To: MORPHMET <morp...@morphometrics.org >
Subject: [MORPHMET] Digitizing landmarks on live larvae
Hi,
I've sta
al Message-
> From: Avi Koplovich [mailto:netbird@gmail.com ]
> Sent: Tuesday, February 27, 2018 3:09 AM
> To: MORPHMET <morp...@morphometrics.org >
> Subject: [MORPHMET] Digitizing landmarks on live larvae
>
> Hi,
> I've started a new project and came to the p
a...@gmail.com]
Sent: Tuesday, February 27, 2018 3:09 AM
To: MORPHMET <morphmet@morphometrics.org>
Subject: [MORPHMET] Digitizing landmarks on live larvae
Hi,
I've started a new project and came to the point of marking fixed and semi
landmarks.
Not all pictures are satisfying, mostly be
/1iO7lCN3ZCtV7DF9vsczkb_EYoSli1Orr/view?usp=sharing
I'll be happy if you can advise on that.
Thank you,
Avi
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, Distinguished Professor, Emeritus. Ecology & Evolution
Research Professor, Anthropology
Stony Brook University
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interested in visiting the historical center of Bordeaux, a
mid-congress guided visit will be organized.
The deadline for abstract submission is March 30^th 2018.
We look forward to seeing you in Bordeaux!
The organizing committee of the 10^th SMEF
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d'anatomie comparée)
55, rue Buffon
F-75231 Paris cedex 05
France.
tel: 33 (0)1 71 21 47 35 fax : 33 (0)1 40 79 33 14
Site web : http://www2.mnhn.fr/archeozoo-archeobota/
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<
lophosto...@gmail.com> wrote:
> Hi ,
> I am looking forward to create 3D models of small bats skull ( genus
> Myotis). Anyone has a good insight on portable 3d scanner for this task
>
> Thanks
>
> --
> MORPHMET may be accessed via its webpage at http://www.morphome
Hi ,
I am looking forward to create 3D models of small bats skull ( genus Myotis).
Anyone has a good insight on portable 3d scanner for this task
Thanks
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Rather than “,”.
>
>
>
>
>
> F. James Rohlf, Distinguished Professor, Emeritus. Ecology & Evolution
>
> Research Professor, Anthropology
>
> Stony Brook University
>
>
>
> *From:* Waira Saravia [mailto:w.sm...@gmail.com]
> *Sent:* Friday, February 2, 2018 10:18
avia [mailto:w.sm...@gmail.com]
Sent: Friday, February 2, 2018 10:18 AM
To: morphmet@morphometrics.org
Subject: [MORPHMET] Problems importing file in TPSrelw
Dear all,
I'm a bachelor student and I'm working with a 2D dataset from roedent skull.
I'm trying to analyze my dataset in TPSrelw, but
sity
From: Ritu YADAV [mailto:y.ritik...@gmail.com]
Sent: Friday, January 26, 2018 10:31 PM
To: MORPHMET <morphmet@morphometrics.org>
Subject: [MORPHMET] problem with tps Relw
hllo every one,
i have problem in uploading files on Tps Relw, i cant select more than one
file. I don
he problem was on my
laptop, but running the same file in other computer appears the same
message. What should I do?
Best regards,
Waira Machida
Universidade de Brasília (UnB)
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hllo every one,
i have problem in uploading files on Tps Relw, i cant select more than one
file. I dont know how to select more than one files. If any one knows then
plzz help me.
With regards
Ritu yadav
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For more information, please visit our website:
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:10.1038/s41467-017-02788-3
Best wishes,
Yoland Savriama
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: a deadly
ecomorphological specialization. In press. Palaeogeography,
Palaeoclimatology, Palaeoecology.
https://doi.org/10.1016/j.palaeo.2018.01.034
Regards
Paolo
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rook University
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, is it relevant to
perform PLS for only two populations (when only PLS1 is calculated)?
Best regards,
Milena
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34 <(515)%20294-3834>
>>
>>
>>
>> *From:* katz.w...@gmail.com [mailto:katz.w...@gmail.com] *On Behalf Of *David
>> Katz
>> *Sent:* Wednesday, January 24, 2018 11:48 AM
>> *To:* Adams, Dean [EEOBS] <dcad...@iastate.edu>
>> *Cc:* Christy Anna Hip
..@gmail.com] *On Behalf Of *David
> Katz
> *Sent:* Wednesday, January 24, 2018 11:48 AM
> *To:* Adams, Dean [EEOBS] <dcad...@iastate.edu>
> *Cc:* Christy Anna Hipsley <chips...@unimelb.edu.au>; MORPHMET <
> morphmet@morphometrics.org>
> *Subject:* Re: [MORPHMET] relativ
du/~dcadams/
>
> phone: 515-294-3834 <(515)%20294-3834>
>
>
>
> *From:* Christy Anna Hipsley [mailto:chips...@unimelb.edu.au]
> *Sent:* Tuesday, January 23, 2018 9:34 PM
> *To:* MORPHMET <morphmet@morphometrics.org>
> *Subject:* [MORPHMET] relative positio
uesday, January 23, 2018 9:34 PM
To: MORPHMET <morphmet@morphometrics.org>
Subject: [MORPHMET] relative positions of landmark partitions in integration
tests - how important?
Hi all,
I'm trying to run an integration test in geomorph, or rather phylo.integration
on 2 sets of Procrustes aligned
don't get any error
message so it is difficult for me to figure out what I am doing wrong. Can any
one tell me how to clean up my data so that I can do a fit on it?
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Research, 84, pp. 483-500
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to differences among groups but not to the overall shape variation
in the sample.
Thanks in advance for any insights you may have with regard to this issue.
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ermutation: free
Number of permutations: 1
If anyone has any idea of why this could be happening or how to fix it
that would be greatly appreciated.
Thanks
Callie Diduck
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---
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of permutations: 1
>
> If anyone has any idea of why this could be happening or how to fix it
> that would be greatly appreciated.
>
> Thanks
>
> Callie Diduck
>
> --
> MORPHMET may be accessed via its webpage at http://www.morphometrics.org
> ---
> You receiv
Permutation: free
Number of permutations: 1
If anyone has any idea of why this could be happening or how to fix it that
would be greatly appreciated.
Thanks
Callie Diduck
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Here is the full list of our courses and Workshops:
> https://www.physalia-courses.org/courses-workshops/
>
> Many thanks for your kind attention.
> Best regards,
>
>
> Carlo Pecoraro, Ph.D
>
> Physalia-courses DIRECTOR
>
> i...@physalia-courses.org
>
> ht
;
>> Best,
>>
>>
>>
>> Dean
>>
>>
>>
>> Dr. Dean C. Adams
>>
>> Professor
>>
>> Department of Ecology, Evolution, and Organismal Biology
>>
>>Department of Statistics
>>
>> Iowa State Universi
Spring 2018 office hours: Tues/Thurs 9-9:30, 3:00-4:15
Wed 10:00-12:15
~
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na). Spain
www.icp.cat
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;
> Best,
>
>
>
> Dean
>
>
>
> Dr. Dean C. Adams
>
> Professor
>
> Department of Ecology, Evolution, and Organismal Biology
>
>Department of Statistics
>
> Iowa State University
>
> www.public.iastate.edu/~dcadams/
>
> phone: 515-29
ation.
> Is there another way to do this without summarizing each group to a mean? Any
> help would be greatly appreciated!
>
> --
> MORPHMET may be accessed via its webpage at http://www.morphometrics.org
> <http://www.morphometrics.org/>
> ---
> You received this me
gt; and would like to know if anyone could recommend to me material that
> clearly lays out the theory of evolutionary allometry, as well as its
> practical application.
>
>
> Kind regards
>
> Ariella Rink
>
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ttp://www.public.iastate.edu/~dcadams/>
phone: 515-294-3834
From: Anderson Feijo [mailto:andefe...@gmail.com]
Sent: Friday, December 29, 2017 3:19 AM
To: MORPHMET <morphmet@morphometrics.org>
Subject: [MORPHMET] Doubt about scalling photos
Hi everyone,
I am starting a new project using GM which
be very grateful for any suggestion.
>
> All the best and Happy 2018!
>
> Anderson
>
> --
> MORPHMET may be accessed via its webpage at http://www.morphometrics.org
> <http://www.morphometrics.org/>
> ---
> You received this message because you are subscribed to the Go
Ariella Rink
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To: MORPHMET <morphmet@morphometrics.org>
Subject: [MORPHMET] DA value calculation
Dear all,
Question 1: If I have a set of specimens which are object symmetry, how could I
calculate directional asymmetry (DA) score for this set of specimen? I noted
that after using bilat.symm fu
find some more *detailed
mathematical definition of Procrustes Variance*?
Thank you very much for your help!
Best regards,
Patrick Wen
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:00 PM
To: MORPHMET <morphmet@morphometrics.org>
Subject: [MORPHMET] Issues with subsetting nts array with classifiers and
plotTangentSpace visualization
Hi,
I'm using Geomorph to analyze a 3D landmark dataset. I'm having a number of
issues both in subsetting my array and visualizing thes
Department of Statistics
Iowa State University
www.public.iastate.edu/~dcadams/<http://www.public.iastate.edu/~dcadams/>
phone: 515-294-3834
From: Phillip Skipwith [mailto:pskipw...@gmail.com]
Sent: Friday, January 5, 2018 4:00 PM
To: MORPHMET <morphmet@morphometrics.org>
Subject: [MORP
> *Sent:* Friday, December 15, 2017 8:37 AM
> *To:* MORPHMET <morp...@morphometrics.org >
> *Subject:* [MORPHMET] Issue with digit.fixed on 3D mesh geomorph
>
>
>
> Hi Everyone,
>
>
>
> First: I apologize if this is a double posting.
>
>
>
magnification scales a couple times
> (not just measuring the same object repeatedly in different
> magnifications), or something along those lines.
>
>
>
> There is a really a lot of literature on this. But you need to use a
> statistics based framework, not EDA tools like PCA t
Feijo [mailto:andefe...@gmail.com]
*Sent:* Monday, January 1, 2018 11:02 PM
*To:* Murat Maga <m...@uw.edu>
*Cc:* MORPHMET <morphmet@morphometrics.org>
*Subject:* Re: [MORPHMET] Doubt Scaling photos
Dear Murat,
Thank you very much for your email and time for explore my dataset. To
perfo
>
> https://www.ncbi.nlm.nih.gov/pubmed/27038025
>
>
>
> Is there a reason you are not using a single magnification level for all
> your samples?
>
> M
>
>
>
>
>
> *From:* Anderson Feijo [mailto:andefe...@gmail.com]
> *Sent:* Friday, December 29, 2017
Is there a reason you are not using a single magnification level for all your
samples?
M
[cid:image001.jpg@01D38100.CDDD1E80]
From: Anderson Feijo [mailto:andefe...@gmail.com]
Sent: Friday, December 29, 2017 1:35 AM
To: MORPHMET <morphmet@morphometrics.org>
Subject: [MORPHMET] Doubt Scaling
copies of the same skull, 5 at ~15 cm and 5 at ~30cm). My question is how
can I combine two set of 2d landmarks based on photos taken from different
distance to the object. I would greatly appreciate any suggestion.
All the Best and Happy 2018!
Anderson
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Paleontológica Argentina* (PE-APA). 17(2): 17(2): 58–74
Best regards
Guillermo
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<https://lh3.googleusercontent.com/-id2J2QGOwC4/Wj2Es42rclI/AAAAA0U/dYaVjK7IMPIY1oZsXgFWeeolNwG2wHvKwCLcBGAs/s1600/1.jpg>
>
> <https://lh3.googleusercontent.com/-Q3DoSe9ZjEU/Wj2Ew86zYdI/A0Y/lbEi_I4bEXEOaIcvkVucFgUxWOLv_8q4QCLcBGAs/s1600/2.jpg>
>
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Rohlf, Distinguished Professor, Emeritus. Ecology & Evolution
Research Professor, Anthropology
Stony Brook University
From: Natalia Siomava [mailto:nat.siom...@gmail.com]
Sent: Friday, December 22, 2017 12:20 PM
To: MORPHMET <morphmet@morphometrics.org>
Subject: [MORPHMET] Proble
ng? I will appreciate any help
and/or suggestions.
Thank you,
Best,
Natalia
<https://lh3.googleusercontent.com/-id2J2QGOwC4/Wj2Es42rclI/A0U/dYaVjK7IMPIY1oZsXgFWeeolNwG2wHvKwCLcBGAs/s1600/1.jpg>
<https://lh3.googleusercontent.com/-Q3DoSe9ZjEU/Wj2Ew86zYdI/A0Y/lbE
phoJ for geometric morphometrics. I have generated
> PCA plots for my data. However, when i try to generate CVA plots, i get
> this warning; kindly assist.
>
>
>
>
>
> --
> MORPHMET may be accessed via its webpage at http://www.morphometrics.org
> ---
> You received th
the images.
F. James Rohlf, Distinguished Professor, Emeritus. Ecology & Evolution
Research Professor, Anthropology
Stony Brook University
-Original Message-
From: Lisa Krendl [mailto:lisa.maria.kre...@gmail.com]
Sent: Tuesday, December 12, 2017 1:22 AM
To: MORP
: Phillip Skipwith [mailto:pskipw...@gmail.com]
Sent: Friday, December 15, 2017 8:37 AM
To: MORPHMET <morphmet@morphometrics.org>
Subject: [MORPHMET] Issue with digit.fixed on 3D mesh geomorph
Hi Everyone,
First: I apologize if this is a double posting.
I'm new to 3D geometric morphometri
tch across the
whole user interface of the program and when I try to zoom in they get very
pixelated.
For further research I want to use the reflex camera. Do you know how I could
solve the problem?
Your help is very much appreciated. Thank you very much in advance.
Kind regards,
Lisa Krendl
--
when I drop below 120k.
Any help would be greatly appreciated,
Skip
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ord Road
Manchester M13 9PT
United Kingdom
Web site: http://www.flywings.org.uk
E-mail: c...@manchester.ac.uk
Phone: +44 161 2753899
Skype: chris_klingenberg
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3899
Skype: chris_klingenberg
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s, so it's likely that I'm
> overlooking something very simple, but after spinning my wheels on this for a
> few days I wanted to reach out for advice. Any help would be greatly
> appreciated!
>
> --
> MORPHMET may be accessed via its webpage at http://www.morphometrics.org
> -
ucci [mailto:morucci...@gmail.com]
Sent: Wednesday, December 6, 2017 8:16 PM
To: MORPHMET <morphmet@morphometrics.org>
Subject: [MORPHMET] Issue with sliders file data
Hi There,
I recently decided to reuse some data from an old 2D GM project on swine tooth
morphology. When I went to rerun some
. This also did not work.
I'm not very experienced with R or the TPS suites, so it's likely that I'm
overlooking something very simple, but after spinning my wheels on this for a
few days I wanted to reach out for advice. Any help would be greatly
appreciated!
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Journal of Primatology*, 79(12). DOI:
10.1002/ajp.22721
All the best
Paolo
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ALSE)
## S3 method for class 'procrustes'
residuals(object)
## S3 method for class 'procrustes'
fitted(object, truemean = TRUE,)
## S3 method for class 'procrustes'
predict(object, newdata, truemean = TRUE,)
protest(X, Y, scores = "sites", permutations = how(nperm = 999))
allotstr. 19, 14193 Berlin
Tel. +49 - 30 - 89 001 -
255http://www.wiko-berlin.de/institution/college-for-life-sciences/
<http://www.wiko-berlin.de/institution/college-for-life-sciences/>
**//___^
**//___^
**//___^
**//___^
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t to re-landmark my OriginScan in Geomorph- all to no luck. I
> continue to get this error even when I attempt to warp along PCs.
>
> Any suggestions on how I can get this work? I feel that I am missing
> something basic here, but have been backwards and forwards through the
> Geomorph man
this work? I feel that I am missing
something basic here, but have been backwards and forwards through the
Geomorph manual for a couple of weeks now to no avail.
Thanks,
Ashleigh
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he p-value that it gives to me? Am I still testing
covariation of x on y? Or I am testing differences in slopes of groups? Thanks
beforehand
Some bibliography would be most wellcome
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150x, would work for you.
Best of luck!
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/course29/>
Here <https://www.physalia-courses.org/courses-workshops/>is the full list
of our courses and Workshops
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rter gene, FgANS in
symmetry of flowers.
Best wishes!
Yoland Savriama
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n press.
The physiological costs of prey switching reinforce foraging
specialization. Journal of animal ecology.
prstatistics.com
facebook.com/prstatistics/
twitter.com/PRstatistics
groups.google.com/d/forum/pr-statistics-post-course-forum
prstatistics.com/organiser/oliver-hooker/
6 Hope Park Crescent
Edi
url.com/RohlfMedal2017>.
>
>
>
> Congratulations Dennis!
>
> _ _ _ _ _ _ _ _ _
>
> F. James Rohlf, Distinguished Prof. Emeritus
>
> [image: univautosig]
>
> Depts. of Anthropology and of Ecology & Evolution
>
>
>
>
>
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MORPHMET may be accesse
gt; thousand points per inch, neutral for colour, and a distance from the
>>> scanner of about 9.5 inches. I am covering the scanner completely with a
>>> card board box to ensure there is no change in light.
>>>
>>> Any help or suggestions would be great. I have
;
> Any help would be greatly appreciated
> Thanks
> Candice Neves
> MSc Candidate
>
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at their widest point and get a successful 3D model out of it.
>>>> Does anyone have any suggestions?
>>>>
>>>> The settings I am using right now are a 360 scan, 14-16 divisions, 3.3
>>>> thousand points per inch, neutral for colour, and a distance from the
>&g
6 divisions, 3.3
>>> thousand points per inch, neutral for colour, and a distance from the
>>> scanner of about 9.5 inches. I am covering the scanner completely with a
>>> card board box to ensure there is no change in light.
>>>
>>> Any help or suggestions would b
irectional asymmetry?
If it does, the samples with pure FA (in Procrustes ANOVA , ind *
side) really contain undetected DA in symmetrical matrix?
If it does not, the samples with pure FA contain what?
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Yo
olour, and a distance from the
>> scanner of about 9.5 inches. I am covering the scanner completely with a
>> card board box to ensure there is no change in light.
>>
>> Any help or suggestions would be great. I have been trying to make this
>> work for the past 2 months
onths.
>
> Thanks,
>
> Callie Diduck
> Master's Candidate
> Department of Archaeology and Anthropology
> University of Saskatchwan
>
>
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Thanks,
Sergey
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ional asymmetry?
> If it does, the samples with pure FA (in Procrustes ANOVA , ind * side)
> really contain undetected DA in symmetrical matrix?
> If it does not, the samples with pure FA contain what?
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You recei
of Saskatchwan
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etrics:
http://www.italian-journal-of-mammalogy.it/public/journals/3/issue_241_complete_100.pdf
ESTIMATE YOUR GLOBAL FOOTPRINT:
http://www.footprintnetwork.org/en/index.php/GFN/page/calculators/
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gt; Any help would be greatly appreciated
> Thanks
> Candice Neves
> MSc Candidate
>
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tion
From: Candice Neves [mailto:536...@students.wits.ac.za]
Sent: Friday, November 10, 2017 5:26 AM
To: MORPHMET <morphmet@morphometrics.org>
Subject: [MORPHMET] Appending tps curves to landmarks
Hi All
I'm currently trying to append curves to landmarks using the function in
to exclude certain landmarks? I think this might be
better).
Any help would be greatly appreciated
Thanks
Candice Neves
MSc Candidate
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Groups "
y deleting
the landmarks I no longer want for my specimens (or should I just tell the
R packages I use to exclude certain landmarks? I think this might be
better).
Any help would be greatly appreciated
Thanks
Candice Neves
MSc Candidate
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MORPHMET may be accessed via its webpage at http://www.morphom
/page/calculators/
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