nesday, January 25, 2017 3:39 PM
To: MORPHMET <morphmet@morphometrics.org>
Subject: [MORPHMET] question about raw tps files in R
Hi, I noted that R command redland.tps (of geomorph package) change raw tps
files while open it, (scaling?). I don´t have a clear idea about how and why
th
--
Dr.Marcelo Cardillo
IMHICIHU-CONICET-UBA
Saavedra 15, 5to piso cp (1083)
Teléfono: (011) 4953-8548 - Interno 212
Buenos Aires. Capital Federal. Argentina
http://conicet.academia.edu/MarceloCardillo
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We seek a PhD student for a three-year position in Vienna, working on the
morphometrics of human pelvises in relation to childbirth and motherhood:
www.oeaw.ac.at/fileadmin/subsites/Jobs/Job_offer_VAMOS_PhD_position_1_.pdf
Best,
Philipp Mitteroecker
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ión Antropología.
>>> Facultad de Ciencias Naturales y Museo.
>>> Universidad Nacional de La Plata
>>> Paseo del Bosque s/n. La Plata 1900. Argentina
>>> Cel: 5492216795916. Fax: 54 221 4257527
>>> https://unlp.academia.edu/DelgadoMiguel
>>> http://
/spreadsheet
for any that would like to keep track of these as well.
Many thanks MORPHMET!
Ashleigh
Ashleigh Haruda, Ph.D.
Ashleigh Haruda, Ph.D.
On Fri, Jan 20, 2017 at 9:15 PM, terrielsimmons <terrielsimm...@gmail.com>
wrote:
> Hi Ashleigh,
>
> The NIH 3D Print Exchange will take
uisition and pricing.
>
> Cheers,
>
> Ashleigh
> Ashleigh Haruda, Ph.D.
>
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801-422-4154 <(801)%20422-4154>
*From:* Ariadne Schulz [mailto:ariadne.sch...@gmail.com]
*Sent:* Wednesday, January 18, 2017 1:27 PM
*To:* Elahe
*Cc:* MORPHMET
*Subject:* Re: [MORPHMET] eliminating the effect of population differences
I would like to hear any responses to this as well. I did
't know why anyone would work in
>> MeshLab without automatically changing this anyway. I've asked a couple of
>> other colleagues but no happy solution so far - I'm hoping someone here
>> might have the magic answer!
>>
>> Thanks,
>> Christy
>>
why anyone would work in
> MeshLab without automatically changing this anyway. I've asked a couple of
> other colleagues but no happy solution so far - I'm hoping someone here
> might have the magic answer!
>
> Thanks,
> Christy
>
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of other
colleagues but no happy solution so far - I'm hoping someone here might
have the magic answer!
Thanks,
Christy
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://www.cearqueologia.com.ar/
> E-mail: medelg...@fcnym.unlp.edu.ar
> *
>
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y 18, 2017 10:27 AM
To: Elahe <ellie.parv...@gmail.com>
Cc: MORPHMET <morphmet@morphometrics.org>
Subject: Re: [MORPHMET] eliminating the effect of population differences
I would like to hear any responses to this as well. I did something similar and
I wasn't sure how to approa
.
F. James Rohlf, Distinguished Professor, Emeritus. Ecology & Evolution
Research Professor, Anthropology
Stony Brook University
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...@lehman.cuny.edu]
> Sent: Tuesday, January 17, 2017 11:06 AM
> To: ashleigh.haruda; Morphmet Discussion Group
> Subject: Re: [MORPHMET] Open Access Repositories for GMM data and 3D models
>
> Ashleigh, the best open-access repository for 3D models is
> morphosource.org T
...@fcnym.unlp.edu.ar
*
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t I downloaded the latest version 1.7 and I have this error.
Any solution?
Best regards,
Zakia
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prohibited.
From: Eric Delson [eric.del...@lehman.cuny.edu]
Sent: Tuesday, January 17, 2017 11:06 AM
To: ashleigh.haruda; Morphmet Discussion Group
Subject: Re: [MORPHMET] Open Access Repositories for GMM data and 3D models
Ashleigh, the best open-access repository
other suggestions for good open access sites? I'm
particularly interested in those which already have support in place,
without having to create customized plans for acquisition and pricing.
Cheers,
Ashleigh
Ashleigh Haruda, Ph.D.
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onsistency of
semilandmarks configuration?
Or is it enough to just anchor the first and the last semilandmarks
with fixed landmarks?
Many thanks in advance,
Eli
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macro lens) but
it isn't sufficiently accurate for smallest specimens (ex. small Myotis sp.
: 13 x 8 x 5 mm).
I know Stereomorph R package but I haven't two cameras and two macro lens
available.
Anyone of you has any suggestions or comments?
Many thanks in advance
Giada
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Campus de la Universitat Autònoma de Barcelona
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moles (Talpinae, Talpidae, Eulipotyphla, Mammalia). *Journal of Mammalian
Evolution. **doi:10.1007/s10914-016-9370-9*
Regards
Paolo
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FREE Yellow BOOK on Geometric Morphometrics:
http://www.italian-journal-of-mammalogy.it/public/journals/3/issue_241_complete_100.pdf
ESTIMATE YOUR GLOBAL FOOTPRINT:
http://www.footprintnetwork.org/en/index.php/GFN/page/calculators/
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h the
> analyses, and assumes a basic level of familiarity that I sadly don't have.
>
> Any and all suggestions are appreciated!
>
> Gabe
>
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From: Emma Sherratt <emma.sherr...@gmail.com>
Sent: Friday, December 23, 2016 12:15:43 PM
To: MORPHMET; dslice
Subject: Re: [MORPHMET] Re: plotting landmarks on Morpheus?
For 3D surface models, I suggest IDAV Landmark Editor
(http://graphics.idav.ucdavis.edu/research/Ev
> analyses, and assumes a basic level of familiarity that I sadly don't have.
>
> Any and all suggestions are appreciated!
>
> Gabe
>
>
>
>
>
>
>
>
>
> --
>
>
> MORPHMET may be accessed via its webpage at http://www.morphometrics.org
>
>
he user's guide seems to start with the
> analyses, and assumes a basic level of familiarity that I sadly don't have.
>
> Any and all suggestions are appreciated!
>
> Gabe
>
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genia
- Practica y Cierre curso (Posible exposiciones estudiantes)
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line itself is not the regression line, but if it's only used for
> visual comparison, is that technically okay?
>
> Thanks for any feedback,
> Christy
>
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only used for
visual comparison, is that technically okay?
Thanks for any feedback,
Christy
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FOOTPRINT:
http://www.footprintnetwork.org/en/index.php/GFN/page/calculators/
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level of familiarity that I sadly don't have.
Any and all suggestions are appreciated!
Gabe
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pecimen
> 100 ISO
> f/32
> 0.5 sec exposure time
> No flash. 3 white lights
> Focus: automatic focus on a manual selected square
>
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ings:
> Camera: NIKON D5300 (24 megapixel)
> Lens: NIKON macro 60 mm, f2.8
> Settings:
> 4-5 cm from the specimen
> 100 ISO
> f/32
> 0.5 sec exposure time
> No flash. 3 white lights
>
nce other programs of
the IMP series work absolutely fine.
I would really appreciate your help!
Best regards, Stefan
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lled.
The starting date for both positions is August 15, 2017.
Additional details and information can be found at
http://hubiosearch.wixsite.com/2017.
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sec exposure time
No flash. 3 white lights
Focus: automatic focus on a manual selected square
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ttp://www.public.iastate.edu/~dcadams/>
phone: 515-294-3834
From: Wong Jin Yung [mailto:wongjiny...@gmail.com]
Sent: Tuesday, December 13, 2016 9:54 PM
To: Adams, Dean [EEOBS] <dcad...@iastate.edu>
Cc: MORPHMET <morphmet@morphometrics.org>
Subject: Re: [MORPHMET] allometry adjustment in R
ther opinion will be
appreciated, many thanks.
Best,
Jin Yung
On Tue, Dec 13, 2016 at 10:28 PM, Adams, Dean [EEOBS] <dcad...@iastate.edu>
wrote:
> Jin Yung,
>
>
> Before sorting out an R-code equivalent for what MorphoJ does, I recommend
> that you revisit and re-read the last
Jin Yung,
Before sorting out an R-code equivalent for what MorphoJ does, I recommend that
you revisit and re-read the last few posts on Morphmet concerning statistical
and biological significance of comparisons of slopes. The important thing to
determine first and foremost is whether
, or 2? If
> so, how can I recover both vectors? What is the difference of including
> f2=~gps using all data, compared to if we make two separate runs of
> procD.allometry, one for samples from species 1, and another for samples
> from species 2?
>
> Thanks for any help.
to statistically detect differences
due to sample size limitations, and the possibility of concluding
homogeneity from this result when it may not be the case. But as Mike
mentioned, the opposite is also a concern. In fact, one might recall a
discussion some months ago on Morphmet on this very
limitations, and the possibility of concluding homogeneity from
this result when it may not be the case. But as Mike mentioned, the opposite is
also a concern. In fact, one might recall a discussion some months ago on
Morphmet on this very issue; where large samples afforded the ability to
discern
yang
>>>> termaklum di atas dan mungkin mengandungi maklumat sulit. Anda dengan ini
>>>> dimaklumkan bahawa mengambil apa jua tindakan bersandarkan kepada, membuat
>>>> penilaian, mengulang hantar, menghebah, mengedar, mencetak, atau menyalin
e selected.
Covariance matrices are only involved as far as a covariance matrix is
necessary to run a PCA. The covariance matrices themselves do not appear
in conection with the procedure.
I hope this helps.
Best wishes,
Chris
On 12/12/2016 12:18, andrea cardini wrote:
Today is my mo
Today is my morphmet-day.
A question, this time, please.
Is there anyone with experience on the "PC Scores From Other PCA" in
MorphoJ?
I am trying to project shape coordinates on a matrix I imported and
attached to a dataset with mean shapes, but the attached dataset does
n
is Message in error, you
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on in reliance upon, or any review, retransmission, dissemination,
>> distribution, printing or copying of this Message or any part thereof by
>> anyone other than the intended recipient(s) is strictly prohibited. If you
>> have received this Message in error, you should dele
gt; anyone other than the intended recipient(s) is strictly prohibited. If you
> have received this Message in error, you should delete this Message
> immediately and advise the sender by return e-mail. Opinions, conclusions
> and other information in this Message that do not relate to the
to all in the
MORPHMET community who continue to assist our efforts to make these networks
as complete as possible prior to the analyses.
Yours in the cause,
Zac
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ing sliding semilandmarks along curves?
>
>
> Thanks in advance for any insight,
>
> Lawrence
>
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iven nor
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d success
> using sliding semilandmarks along curves?
>
>
> Thanks in advance for any insight,
>
> Lawrence
>
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to consider (e.g. 1275).
But as Tom emphasized below machine is only one part of it.
M
From: Thomas O'Mahoney <tomomaho...@gmail.com>
Sent: Tuesday, December 6, 2016 1:03:58 PM
To: Angela Roggero; lk...@siue.edu
Cc: MORPHMET
Subject: Re: [MORPHMET] RE: mi
Whatever you choose, there are very good open source packages. If you are
>> spending tens of thousands of dollars on your analysis and visualization
>> software, you are wasting money.
>>
>> M
>>
>>
>> From: Kohn, Luci [mailto:lk...@siue.edu]
>
rce packages. If you are
> spending tens of thousands of dollars on your analysis and visualization
> software, you are wasting money.
>
>
>
> M
>
>
>
>
>
> *From:* Kohn, Luci [mailto:lk...@siue.edu <lk...@siue.edu>]
> *Sent:* Wednesday, Novembe
do not include the 3D mesh itself.
>
> Is this something I should be worried about? Has anyone else had success
> using sliding semilandmarks along curves?
>
>
> Thanks in advance for any insight,
>
> Lawrence
>
> --
> MORPHMET may be accessed via its webpage at http
packages. If you
are spending tens of thousands of dollars on your analysis and
visualization software, you are wasting money.
M
*From:*Kohn, Luci [mailto:lk...@siue.edu]
*Sent:* Wednesday, November 30, 2016 6:41 AM
*To:* MORPHMET <morphmet@morphometrics.org>
*Subject:* [MORPHMET] mi
sliding semilandmarks along curves?
Thanks in advance for any insight,
Lawrence
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/index.php/GFN/page/calculators/
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al-of-mammalogy.it/public/journals/3/issue_241_complete_100.pdf
ESTIMATE YOUR GLOBAL FOOTPRINT:
http://www.footprintnetwork.org/en/index.php/GFN/page/calculators/
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ard...@unimore.it
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FREE Yellow BOOK on Geometric Morphometrics:
http://www.italian-journal-of-mammalogy.it/public/journals/3/issue_241_complete_100.pdf
ESTIMATE YOUR GLOBAL FOOTPRINT:
http://www.footprintnetwork.org/en/index.php/GFN/pag
issue_241_complete_100.pdf
ESTIMATE YOUR GLOBAL FOOTPRINT:
http://www.footprintnetwork.org/en/index.php/GFN/page/calculators/
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[mailto:lk...@siue.edu]
Sent: Wednesday, November 30, 2016 6:41 AM
To: MORPHMET <morphmet@morphometrics.org>
Subject: [MORPHMET] micro-CT suggestions
I am planning to apply for funding for a micro-CT unit (and associated
software. Does anyone have suggestions of models they would rec
Illinois University Edwardsville
Edwardsville, IL 62026-1651
Phone: (618) 650-2394
Fax: (618) 650-3174
e-mail: lk...@siue.edu
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st regards
Sole
Soledad De Esteban-Trivigno
Institut Català de Paleontologia Miquel Crusafont (ICP)
Campus de la Universitat Autònoma de Barcelona
Cerdanyola del Vallès (Barcelona). Spain
www.icp.cat
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Yo
Department of Statistics
Iowa State University
www.public.iastate.edu/~dcadams/<http://www.public.iastate.edu/~dcadams/>
phone: 515-294-3834
From: Christy Hipsley [mailto:chips...@museum.vic.gov.au]
Sent: Monday, November 28, 2016 6:44 PM
To: MORPHMET <morphmet@morphometrics.org
ny Brook University 11794-4364
WWW: http://life.bio.sunysb.edu/morph/rohlf
P Please consider the environment before printing this email
From: Christy Hipsley [mailto:chips...@museum.vic.gov.au]
Sent: Monday, November 28, 2016 6:04 PM
To: MORPHMET <morphmet@morphometrics.org>
Subj
y
e-mail c.fruci...@unict.it
http://www.fruciano.it/research/
On Tuesday, November 29, 2016 at 10:04:02 AM UTC+11, Christy Hipsley wrote:
Dear Morphmet-ers,
I'm seeking advice on methods for visualizing shape features that
distinguish multiple groups using GM. I know CVA has fallen out of fa
ary Fellow - University of Catania - Catania, Italy
e-mail c.fruci...@unict.it
http://www.fruciano.it/research/
Christy Hipsley <chips...@museum.vic.gov.au> ha scritto:
Dear Morphmet-ers,
I'm seeking advice on methods for visualizing shape features that
distinguish multiple groups usin
Dear Morphmet-ers,
I'm seeking advice on methods for visualizing shape features that
distinguish multiple groups using GM. I know CVA has fallen out of favor
for a number of reasons discussed here - e.g., more variables than groups,
nonisotropic variation:
Mitteroecker, P., and Bookstein, F
Thanks a lot guys for your quick responses. I wish you p values smaller than
0.05!
Jose
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cs-using-r-gmmr01/
20. INTRODUCTION TO METHODS FOR REMOTE SENSING (July 2017)
21. ECOLOGICAL NICHE MODELLING (October 2017)
22. ANIMAL MOVEMENT ECOLOGY (TBC)
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And be careful, in general, with missing data imputation. It should be used
sparingly. Parameter estimates for substituted data are generally unbiased,
but variance estimates are underestimated - it looks like you have more
data that your really do.
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rph in R have functions for estimating missing landmarks.
> See
> > if they give you reliable estimates, and then you can proceed with your
> > analysis.
> >
> > Otherwise your options are limited to those two.
> > M
> >
> >
> > -Origi
://link.springer.com/journal/427/226/3/page/1
or
http://link.springer.com/article/10.1007/s00427-016-0547-2/fulltext.html
Best,
Mark
Mark C. Belk, Professor of Biology
Brigham Young University
Editor, Western North American Naturalist
801-422-4154
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share it?
Thanks a lot.
Jose
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t
of reference samples. Both
>> > Morpho and gemorph in R have functions for estimating missing landmarks.
>> > See
>> > if they give you reliable estimates, and then you can proceed with your
>> > analysis.
>> >
>> > Otherwise your options
with your
> > analysis.
> >
> > Otherwise your options are limited to those two.
> > M
> >
> >
> > -Original Message-
> > From: Rosa Perez [mailto:rmper...@ncsu.edu]
> > Sent: Saturday, November 12, 2016 9:53 PM
> > To
estimating missing landmarks. See
> if they give you reliable estimates, and then you can proceed with your
> analysis.
>
> Otherwise your options are limited to those two.
> M
>
>
> -Original Message-
> From: Rosa Perez [mailto:rmper...@ncsu.edu]
> Sen
estimates, and then you can proceed with your analysis.
Otherwise your options are limited to those two.
M
-Original Message-
From: Rosa Perez [mailto:rmper...@ncsu.edu]
Sent: Saturday, November 12, 2016 9:53 PM
To: MORPHMET <morphmet@morphometrics.org>
Subject: [MORPHMET] Re: P
ymmetry
project and cannot get MorphoJ to run. It keeps giving me an error message. Did
you happen to figure out what the issue was? I would truly appreciate any
advice you might be able to share.
Thank you,
Rosa Perez
Masters Student
NCSU
Dept of Anthropology
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nt at Pontificia Universidad Javeriana
> Ichthyology Laboratory 108B Ed 53 - 3208320 Ext 4127
> ---
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> Laboratorio de Ictiología 108B Ed 53 - 3208320 Ext
e: 515-294-3834
From: Edgar Esteban Herrera Collazos [mailto:edgaresteba...@gmail.com]
Sent: Tuesday, November 8, 2016 7:27 PM
To: morphmet@morphometrics.org
Subject: [MORPHMET] Measurements to Landmarks
Hey everyone,
Just wondering, I have a sets of measurements, and I was wondering if there is
108B Ed 53 - 3208320 Ext 4127
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Laboratorio de Ictiología 108B Ed 53 - 3208320 Ext 4127
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, Crawley WA 6009,
Australia
E-mail address: alcard...@gmail.com, andrea.card...@unimore.it
WEBPAGE: https://sites.google.com/site/alcardini/home/main
FREE Yellow BOOK on Geometric Morphometrics:
http://www.italian-journal-of-mammalogy.it/public/journals/3/issue_241_complete_100.pdf
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MORPHMET
shlab, chances are good that your model is
> misconstructed. I don’t think it is anything to do laser vs photogrammetry.
>
> M
>
>
>
>
> From: Gabriel Wrobel [mailto:gwrobe...@gmail.com]
> Sent: Tuesday, November 01, 2016 12:48 PM
> To: MORPHMET <morphmet@morphom
their own format.
If you can’t open it with Meshlab, chances are good that your model is
misconstructed. I don’t think it is anything to do laser vs photogrammetry.
M
From: Gabriel Wrobel [mailto:gwrobe...@gmail.com]
Sent: Tuesday, November 01, 2016 12:48 PM
To: MORPHMET <morph
scans. Is this
> > an issue anyone is familiar with? Thanks!
> >
> > gabe wrobel
> >
> > --
> > MORPHMET may be accessed via its webpage at http://www.morphometrics.org
>
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MORPHMET may be accessed via its webpage at http://www.morphometrics.org
*
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MORPHMET may be accessed via its webpage at http://www.morphometrics.org
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t
Postdoctoral Fellow - Queensland University of Technology - Brisbane,
Australia
Honorary Fellow - University of Catania - Catania, Italy
e-mail c.fruci...@unict.it
http://www.fruciano.it/research/
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MORPHMET may be accessed via its webpage at http://www.morphometrics.org
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You received
!
gabe wrobel
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MORPHMET may be accessed via its webpage at http://www.morphometrics.org
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MORPHMET may be accessed via its webpage at http://www.morphometrics.org
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It didn't work for me:
Downloading GitHub repo geomorphR/geomorph@master from URL
https://api.github.com/repos/geomorphR/geomorph/zipball/master
Error in stop(github_error(request)) : 404: Not Found
(404)
I am using R Studio Version 0.99.903 for Windows.
Best regards,
Milena
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MORPHMET
it. It seems
to be fine with ply files created from laser scans. Is this an issue
anyone is familiar with? Thanks!
gabe wrobel
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MORPHMET may be accessed via its webpage at http://www.morphometrics.org
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That worked!
Thank you,
Milena
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day, October 28, 2016 8:57 AM
To: geomorph R package <geomorph-r-pack...@googlegroups.com>
Cc: morphmet@morphometrics.org
Subject: [geomorph-r-package] Re: geomorph updates
It didn't work for me:
Downloading GitHub repo geomorphR/geomorph@master from URL
https://api.github.com/repos/geomorp
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