Hello,
In a python script I am displaying atoms colored by b-factors with command
'spectrum' using blue_red palette. Can I display the colorbar as a legend
in some corner?
Thanks for any help.
Regards,
Hitesh Patel
PhD Research Fellow,
Institut für Pharmazeutische Wissenschaften
Hi all,
I was trying to use the APBS plug in with PyMOL version 1.7 and I'm getting
this error with pymol generated files not being found in the tmp directory:
Could not find
/var/folders/ZV/ZV5Pv67hjYmI8-m0PQU0ElL-r0o/-Tmp-/pymol-generated.dx so
searching for
Hi Seth,
I had problems with the underlying APBS version (1.4 I believe) under Windows
in Pymol 1.7. It croaked with an memory allocation error, which I only found
after I ran the .in file manually in APBS. Try that. You can either install an
upgraded version of APBS or switch to Pymol 1.8,
Sorry, I got my versions crossed. I had the same issues with 1.6, it worked
again with 1.7. Nevertheless I'd try running the .in file separately to debug
what is going on behind the scenes.
-C.
From: Schubert, Carsten [JRDUS]
Sent: Wednesday, January 22, 2014 4:57 PM
To: Seth Harris;
Hi Seth,
ObjectMapLoadDXFile-Error: Unable to open file!
ObjectMapLoadDXFile: Does
'/var/folders/ZV/ZV5Pv67hjYmI8-m0PQU0ElL-r0o/-Tmp-/pymol-generated-PE0.dx'
exist?
It is true that neither of these files exist there, though
pymol-generated.pqr, .in and .pdb are there.
You didn't mention
I have several .pse files I made on pymol 1.3 version--that may or may not be
of significant to what is going on--but when I open the file and try to use the
measurement wizard on them, I am prompted to click on the first atom, and
when I do so, nothing happens (nothing gets selected and no
