Re: [PyMOL] To all PyMOL supporters, a message from DeLano Scientific

It is a very sad news. I've been asked to perform a PyMOL training next year in France. I will dedicate this session to his memory. If I can help anyway, tell me. Best regards, Jerome Pansanel Le jeudi 05 novembre 2009 21:27:38, Jason Vertrees a écrit : PyMOLers, I have been asked

Re: [PyMOL] Adding python modules

\dbsearch.py, line 54, in ? import MySQLdb ImportError: No module named MySQLdb Error: unable to initialize plugin 'dbsearch'. Bye DeVill 2007/3/9, Jerome Pansanel j.pansa...@pansanel.net: Hi, Take a look on this plugin: http://pymol-plugins.sourceforge.net/dbsearch.html Cheers

Re: [PyMOL] Adding python modules

Try to copy MySQLdb into: C:\Program Files\DeLano Scientific\PyMOL\py24\Lib\site-packages\ Jerome Pansanel Le vendredi 9 mars 2007 19:54, DeVill a écrit : Hi! I know that as well... what I don't know is how to install it under PyMOL. If I were using simply python, than that would be no big

[PyMOL] Plugin for Open Babel

Cheers, Jerome Pansanel

Re: [PyMOL] chempy documentation

Hi, Frowns is another Python-based chemical informatics library, but is no more maintained. A great idea would be to initiate such project. We could based the design on the CDK library (http://cdk.sourceforge.net/). Comments or suggestions ? Cheers, Jerome Pansanel Le lundi 20 novembre

Re: [PyMOL] PDB loader

() ) + pdbData = gzip.GzipFile(fileobj=pdbStream) + cmd.read_pdbstr(pdbData.read(), self.pdbCode) *** If you have problem to deal with such piece of code, I can send you the complete plugin. Cheers, Jerome Pansanel Le mercredi 18 octobre 2006 16:59

Re: [PyMOL] Hydrogen bonds

Dear Selvaraj, You will find useful resources about hydrogen bonding with PyMOL on: http://www.rubor.de/bioinf/tips_modeling.html#addhbond Regards, Jerome Pansanel Le mercredi 23 août 2006 22:48, selva raj a écrit : Dear Pymol users, Would anyone tell me how to draw hydrogen bonds

Re: [PyMOL] Displaying Disulphide bonds using Pymol

Hello, You can find some documentation about sulfur bonds on this page: http://www.pymolwiki.org/index.php/Process_All_Files_In_Directory If you are not successfull by using this resource, don't hesitate to post again. Cheers, Jerome Pansanel Selon Nagesh Chakka nagesh.cha...@anu.edu.au

Re: [PyMOL] (small) Pymol feature request--filter for edit settings window

! Cheers, Jerome Pansanel Le Mardi 18 Avril 2006 18:02, Michelle Gill a écrit : While we're discussing ways to make our favorite program a little better, I had an idea I thought I'd throw out there... While making some figures the other day, I found myself scrolling endlessly through the edit

Re: [PyMOL] (small) Pymol feature request--filter for edit settings window

! Cheers, Jerome Pansanel Le Mardi 18 Avril 2006 18:02, Michelle Gill a écrit : While we're discussing ways to make our favorite program a little better, I had an idea I thought I'd throw out there... While making some figures the other day, I found myself scrolling endlessly through the edit

Re: [PyMOL] Sequence view print out

, Jerome Pansanel Thanks J

Re: [PyMOL] Sequence view print out

, Jerome Pansanel Thanks J

Re: [PyMOL] output formats

file. Cheers, Jerome Pansanel Le Mercredi 08 Février 2006 05:03, scott_lu...@med.unc.edu a écrit : Is there any way to output in any of the following file formats? .max, .drf .3ds, .prj .ai .dem, .xml, .ddf .dwg, .dxf .fbx .htr .ige, .igs, .iges .ipt, .iam .ls, .vw, .lp .obj .shp

[PyMOL] Python scripting for Pymol

solution to delete the molecule only when the png file has been written ? Thanks, Jerome Pansanel

[PyMOL] New PyMOL plugin

on a result line, the structure is open into the PyMOL visualization window. You can find the plugin at this address: http://www.pansanel.net/chemistry/resources/pymol_pdbsearch.tar.gz I'm waiting for your comments ! Thanks Jerome Pansanel Mail sent

Re: [PyMOL] Plugins

resource : http://www.pymolwiki.org/index.php/Category:Plugins_Tutorial Jerome Pansanel

[PyMOL] New plugin

, Jerome Pansanel

Re: [PyMOL] PyMol training

Hi, I've planned to write a french training document for PyMOL. I would enjoy that some people help me by reading my draft, before I release it. This document will be released under a Creative Common License (cc). Thanks, Jerome Pansanel Le Lundi 10 Octobre 2005 09:29, Kristian Rother

Re: [PyMOL] [OT] alternative python module

Hello, You can find modules inside some software package, like: PyQuante (http://pyquante.sourceforge.net/) FROWNS (http://frowns.sourceforge.net/) MMTK (http://starship.python.net/crew/hinsen/MMTK/) All these software are free software. Regards, Jerome PANSANEL -- Jerome PANSANEL http