[PyMOL] RE: PyMOL-users digest, Vol 1 #614 - 2 msgs

Many thanks, Luca. That was exactly what I was hoping for with respect to DNA. Raji --__--__-- Message: 2 To: Mailing List PyMol Users pymol-users@lists.sourceforge.net From: Luca Jovine lucajov...@mac.com Date: Fri, 4 Jun 2004 20:52:52 -0400 Subject: [PyMOL] nuccyl 1.5 released --Apple-Mail-1

[PyMOL] RE: Coloring Amino Acids: PyMOL-users digest, Vol 1 #613 - 1 msg

expressions above and examples can be found in the PyMOL manual online. Hope that helps. Raji Hi all, I was wondering if there is a way to color all of a specific type of amino acid the same color in a pdb file (i.e. all the Leucines colored green, all the lysines blue, etc). Thanks -Greg Raji

[PyMOL] Can't load maps anymore!

, buckleddna Isomesh: created map, setting level to 0.500 ObjectMesh: updating map. IsosurfVolume: Surface generated using 0 lines. --- Thanks a ton, Raji Raji Edayathumangalam Dept. of Biochemistry Molecular Biology Colorado State University Fort Collins, CO 80523 USA Tel:(970)491

[PyMOL] Filled view for deoxyribose rings, bases in DNA ???

Hi Everyone, How can I show the deoxyribose sugar and the bases in the DNA in the stick mode but as filled representations ? Thanks, Raji Raji Edayathumangalam Dept. of Biochemistry Molecular Biology Colorado State University Fort Collins, CO 80523 USA Tel:(970)491-4614 Fax:(970)491-0494

[PyMOL] Filled Aromatic Rings in Heteroligands ??

Hi Everyone, I have a ligand containing aromatic rings (pyrroles, imidazoles). I'd like to show them as filled or shaded rings in the stick representation mode. Could anyone suggest how to go about doing it in Pymol ? Thanks very much, Raji Raji Edayathumangalam Dept. of Biochemistry Molecular